BtaALTA0033954-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12181607-12182802:-
Coord C1 exon
chr7:12182679-12182802
Coord A exon
chr7:12181668-12181705
Coord C2 exon
chr7:12181607-12181667
Length
38 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CATATGTCCTTCTCCAGCAGCAG
3' ss Score
4.8
Exon sequences
Seq C1 exon
GAATCAGTCACCTTAGAGGATGTGGCGATGGAGCTCATCCAGGAGTGGACGTTGCTGGACGATGCTGGGAGGAACCTGTGCAGACACGTGCTGCAGGACAACTGCAGGACCCCAGCGCCCAGGG
Seq A exon
CAGGGACTCCACCATGCAAAGCCAGTCTCGTCTCCCAG
Seq C2 exon
GTGGAGCCAAGAGAAGAGCTGAAAGCAGCAGAGCACGGTGTTCTCTGTGCCACGGGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=88.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGCGATGGAGCTCATC
R:
TCAGCTCTTCTCTTGGCTCCA
Band lengths:
128-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development