BtaINT0165296 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005882 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr7:12181607-12182802:-
Coord C1 exon
chr7:12182679-12182802
Coord A exon
chr7:12181706-12182678
Coord C2 exon
chr7:12181607-12181705
Length
973 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CATATGTCCTTCTCCAGCAGCAG
3' ss Score
4.8
Exon sequences
Seq C1 exon
GAATCAGTCACCTTAGAGGATGTGGCGATGGAGCTCATCCAGGAGTGGACGTTGCTGGACGATGCTGGGAGGAACCTGTGCAGACACGTGCTGCAGGACAACTGCAGGACCCCAGCGCCCAGGG
Seq A exon
GTAAGGCTTTTGCTACTCTGGTTCTTCCTGTATGCAGATGCTCTTTTTTTCTTTTTTTTAAATTACTTATTTATTTATTTATGGCTGTGCTGGGTCTTTCTTTACTTGGGGCGAGGGGGACCTACTCTCTGGTTGCGGTGCGCGGGTTTCTCACTGCAGCGACTTCTCTTGTTATGGAGTACAAGCTCTGGGATGCGCAGGCTTCAGTAGTTGTGGCTCCCTGGCTCTAGAGCACTGGCTCGGTGGTTGTGGTGCATGGGCTTAGTGGCCCCACAGCATGAGTGATCTTCCTGGACCGGAGATTGAACCCACCACGTCTCCTGCATTGGTAGGTGGGGAAGCCCTGCAAATGCCCTTTAAGTGCTTGCCACATGGCCACAGTGATGCAGTGTGGGTTTCAGAAGGTTTGTCATTCATGGGCTTTCATAGGATAACAGCTGCATGCATTGAGTGGACTTCATTCTCTATATAGTCAGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCGGCCTGCATTGTGGGAGACTCAGGGTCAGTCACTGGGTCAGGAAGATCCTCTGGAGGAGGGAATGGCTACCCACTCAGTATTCTTGCCTGGAGAATTCCATGGACATAGAAACTACAGGGGAGCCTAGCGGGCTACAGTTCATAGAGGTTGCAAAGAGTTGGACACGACTGAGTGACTAATACTTTCTCCATGGTCAGGACCTGCATAGGTCTCCTTGAGTTTGGCCTTGGAACTTAGAGAACCTCAGTTCAGAAGGACAGAGAGGAGAGTGTTTGTGGTTTGGGCCCTTGTAAAGGAACCTCATTGAATTCATTAAAAAAAAAATTGAATGTGATTGCTTAGGTCCCCGCCTACTTGCTTGGCTTCAGGAGCTAAGGCCCAGGTGGAGAGTGGGCAGGCTGGGGAAGCATTTATTTTCCTCTGCAAGCCCTTCCTCCCTCAGCCCATATGTCCTTCTCCAGCAG
Seq C2 exon
CAGGGACTCCACCATGCAAAGCCAGTCTCGTCTCCCAGGTGGAGCCAAGAGAAGAGCTGAAAGCAGCAGAGCACGGTGTTCTCTGTGCCACGGGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005882:ENSBTAT00000007733:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=88.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGTCACCTTAGAGGATGTGG
R:
CACACCCGTGGCACAGAGAA
Band lengths:
222-1195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]