HsaINT0186904 @ hg38
Intron Retention
Gene
ENSG00000160961 | ZNF333
Description
zinc finger protein 333 [Source:HGNC Symbol;Acc:HGNC:15624]
Coordinates
chr19:14695010-14695661:+
Coord C1 exon
chr19:14695010-14695133
Coord A exon
chr19:14695134-14695565
Coord C2 exon
chr19:14695566-14695661
Length
432 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GTGTCTTTCTTCATGTGCAGGAA
3' ss Score
11.14
Exon sequences
Seq C1 exon
GAATCCGTCACCTTTGAGGATGTGGCCGTGGAGTTCATCCAGGAGTGGGCATTGCTGGACAGCGCACGGAGGAGCCTGTGCAAATACAGGATGCTTGACCAGTGCAGGACCCTGGCCTCCAGGG
Seq A exon
GTAAGGCTGGCGTCACCTGGCTCCTTCCTGTACGCAGGCACTAAATGCTTCTTAAGCGCCTGCCATGTGAAGAAGACAGACGTGGCTTAGGCTTTGTGGCACTTAGCGTCCACAGGATGACAAAGCTTCATCTGTTGCATTGACTTCTTTCCCTCTGTAGTAAGGCCCTGTTTGGGTCTCCTTGAATTTGGCCCCAGGCTTCTGAGGTGAGACAGCCTCAGCCCCTTGGGGCAGAGGGGAGGGTGTTTGTGGGTTGGGTCCTGAGTTCATTAGCTATTGGGCAAGATCCCTTTGCTACCCATCACACTTGCTCAGCCCAGAGAATCTGAAGCCCATATTGAAGCTGAAGGAGAGTTTGAGTTGAGAAACAAGAGTTTGTTTTCCCCTGCAAGCCCTCTCTCTCTCAGTGCCTGTGTCTTTCTTCATGTGCAG
Seq C2 exon
GAACTCCACCATGCAAACCCAGTTGTGTCTCCCAGCTGGGGCAAAGAGCAGAGCCAAAGGCAACAGAACGAGGGATTCTCCGTGCCACAGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160961:ENST00000292530:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.374
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCACCTTTGAGGATGTGG
R:
AACACCTGTGGCACGGAGAAT
Band lengths:
215-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains