BtaALTA0034027-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2365164-2365816:-
Coord C1 exon
chr7:2365515-2365816
Coord A exon
chr7:2365216-2365262
Coord C2 exon
chr7:2365164-2365215
Length
47 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CCTCTCCTCATGAACAGTAGAAG
3' ss Score
0.44
Exon sequences
Seq C1 exon
GTCACCCAAACCGGGTCCCAGAGAAGGAGGCCTGAGGCTAGAGAACAGCATAGCCTGAGAGACGTCTCGACAGTGAAGATGCAGCCTTCTTAGCTTCTTTTTTTGAGGAGAAAGAAGACGACCCTCCTTCCCTACTTCCTCTACTCCCCTCCCAGGATTAGGCAGGTGTCCAGGCAGGAGTCACACGTTTCTTGAGATCTCTCAGCATAATTTAAGGGCAAAAGGCCAGAGGGTGTGTAAAAAGTGTGAAATCGGGCTGGAGGATGCTTTTTTCAAGGAAAAGTCAAGATACAGAAGGAAAG
Seq A exon
AAGGTGTTTCCAGCCTGAGGATTTCCACTCTGCTTGTCTCTAAAAAG
Seq C2 exon
GCTCATCAGAGAAGAAGGAATGGCAGTCAGGTGCCTGCCCGCCATGGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262-5-4,5-3,5-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCATAATTTAAGGGCAAAAGGC
R:
GCACCTGACTGCCATTCCTTC
Band lengths:
135-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development