BtaINT0165539 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2365164-2365816:-
Coord C1 exon
chr7:2365515-2365816
Coord A exon
chr7:2365266-2365514
Coord C2 exon
chr7:2365164-2365265
Length
249 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
AGTCCTCTCCTCATGAACAGTAG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GTCACCCAAACCGGGTCCCAGAGAAGGAGGCCTGAGGCTAGAGAACAGCATAGCCTGAGAGACGTCTCGACAGTGAAGATGCAGCCTTCTTAGCTTCTTTTTTTGAGGAGAAAGAAGACGACCCTCCTTCCCTACTTCCTCTACTCCCCTCCCAGGATTAGGCAGGTGTCCAGGCAGGAGTCACACGTTTCTTGAGATCTCTCAGCATAATTTAAGGGCAAAAGGCCAGAGGGTGTGTAAAAAGTGTGAAATCGGGCTGGAGGATGCTTTTTTCAAGGAAAAGTCAAGATACAGAAGGAAAG
Seq A exon
GTACTGAGAATTTGACTCATATTGCTAGGGGGAAATTGATGGGGGGGTGGGAGTAGCAGCAAGATGAGCTATTCCCTTTACAGTGGAGGCCAGCAGAAATATCCCCGAAGAGGAGAGAGGATTGGGAGCAAACAGGGACTAAGAATTCACTGTTTGGGGTATTGGCGGATTCCCAGGGTGTGAATGCTCAAAGCCCCCCTTTGGACTGCTGTGTGATATCTTTTGACCCAGTCCTCTCCTCATGAACAG
Seq C2 exon
TAGAAGGTGTTTCCAGCCTGAGGATTTCCACTCTGCTTGTCTCTAAAAAGGCTCATCAGAGAAGAAGGAATGGCAGTCAGGTGCCTGCCCGCCATGGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCATAGCCTGAGAGACGT
R:
GCAGAGTGGAAATCCTCAGGC
Band lengths:
294-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]