BtaALTA0034061-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000031686 | ZNF566
Description
Bos taurus zinc finger protein 566 (ZNF566), mRNA. [Source:RefSeq mRNA;Acc:NM_001077017]
Coordinates
chr18:47250213-47250740:+
Coord C1 exon
chr18:47250213-47250339
Coord A exon
NA
Coord C2 exon
chr18:47250645-47250740
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTTACTTCTTTTATAAGCAGGAC
3' ss Score
6.56
Exon sequences
Seq C1 exon
GAGTCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGAATTCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
Seq A exon
NA
Seq C2 exon
GACATTCTATTTCTAAACCAGATGTGATCTCCTTCTTGGAGCAAGGGAAGGAGCCCTGGTTGGTTGACAGAGAACTAACAAGAGACCAGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031686-6-7,6-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACCTGGTTTCAATGG
R:
GTTCTCTGTCAACCAACCAGGG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development