BtaEX0041400 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000031686 | ZNF566

Description

Bos taurus zinc finger protein 566 (ZNF566), mRNA. [Source:RefSeq mRNA;Acc:NM_001077017]

Coordinates

chr18:47250213-47266289:+

Coord C1 exon

chr18:47250213-47250339

Coord A exon

chr18:47250645-47250740

Coord C2 exon

chr18:47264490-47266289

Length

96 bp

Sequences

Splice sites

3' ss Seq

CTTACTTCTTTTATAAGCAGGAC

3' ss Score

6.56

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

GAGTCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGAATTCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG

Seq A exon

GACATTCTATTTCTAAACCAGATGTGATCTCCTTCTTGGAGCAAGGGAAGGAGCCCTGGTTGGTTGACAGAGAACTAACAAGAGACCAGTGGCCAG

Seq C2 exon

TCCTGGAGTCAAGATGTGAGACCAAGAAATTATTTCTGAAGAAGGAAATTTATGAAATAGAGTCAGCCCAGTGGGAGTTAATGGACAGACTTACAAGACATGACCTTCAGTGCTCCAGTTTCAGAGATGAATGGGAATGTAATGGCCAGTTTGAGAAACAACATGGCTCTCAGGAGGGACATTTCAGTCAACTGATATTCACCCATGAAGGCATGCCTACTTTTAGTCAACATCCATCCTTTACATTACAGCAAATCATGAATAATAATAAAGAGAAATACTGTGCAACTAAGGAATATAGGAAAACCTTCAGACATGACTCACAGCTTACCACACATCAGATCATCCATACTGTTGAGAAACCCTATGAGTGTAAGGAATGTGGAAAGGCCTTTAGACATCCTTCAAGACTCAGTCATCATCAGAAAATTCATTCTGGTAAGAAACCGTTTGAATGTAAGGAATGTGGAAAAACCTTTATTTGTGGCTCAGACCTCACC

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000031686_MULTIEX1-5/6=4-6

Average complexity

C1*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.082

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=13.4),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)

Main Inclusion Isoform:

ENSBTAP00000006397