MmuEX0053459 @ mm10
Exon Skipping
Gene
ENSMUSG00000074221 | Zfp568
Description
zinc finger protein 568 [Source:MGI Symbol;Acc:MGI:2142347]
Coordinates
chr7:30015066-30025111:+
Coord C1 exon
chr7:30015066-30015189
Coord A exon
chr7:30017167-30017262
Coord C2 exon
chr7:30022218-30025111
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTGTCTTTGGACAGGTC
3' ss Score
10.69
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATCTGAGGTTCGAGGATGTGGTCATTTACTTCTCTCTGGAGGAGTGGGAGTGCTTGCGCCATTCCCACAGGAATCTGTACCGAGCTGTGATGTTGGATAACTACAGCAACCTGCTGTCACTGA
Seq A exon
GTCTTGCTGATACTAAGCCACGGGTGGTCTCCCTTCTAGAACAGGGCAAAGAGCCCTGGATGGTTATGAGGAATGAGACAAAAATTTGGCATCCTG
Seq C2 exon
ATTGGGTGTCTAGGACAGAAGCCAAGGACAGTTCCAAAATTAAAACATTGCAAGAAAAGATGGCAAAAAAACACACATGCCCCACTCTTGAGGACAGCAAGACCAGAGGGGACAGAGAAGTCACACGTGAGCTGGAGGGTCAACAGGTCCATCAGGAGGGACACTTGAGGCAAGCTGCAGTAACCTCTGTCGAGAGGCCTGATTCTGTCCAGTGCACAGCCCATAGGGAGGCTCACCCTGGAGGAAAACCCTGCAGCTCTGAGAAAAGTCAGAAAACGTCCCTGTGCCAGCCACCTCCCATTGAACGTGAGCAACTTCACAGTAAGGCAAAGGCCAGTGAGCATGCACAGCATGGCAAGGTCTTTAATAGCTGCACGTCAGACACGGCTGTGCATCCGAGACCCCAGGAAAGCAGAAAAGACAGTGAGAGGAAGAAAAGTGCCCTTGCTGGTGGTCCTGACACCTCGAAACCTCAGAGCGCTCAGGGGAGTGAGAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074221-'18-22,'18-20,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.452
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGGAGGAGTGGGAGTG
R:
CAAGAGTGGGGCATGTGTGTT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types