BtaALTA0034078-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000038487 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr18:58132927-58135099:+
Coord C1 exon
chr18:58132927-58133127
Coord A exon
NA
Coord C2 exon
chr18:58134973-58135099
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GCAGGACTGTGTTGTTACAGCGA
3' ss Score
3.91
Exon sequences
Seq C1 exon
GTCCCTGATACATCAAGATACAAGATACATCAAGTGACATGAGGAGGTTTCCCTTCCTCGATGTCCTCACTTGCAGGGACATCACTGCCTTGGGACTAAGATTTCTAACCCGAAATTGAGGGAAGTCCAAAAGGAGACTCAGGACACATCCTAGTCTTTGTCCAGTTCTCAATATATCAGAAGAAAATGATCAAGGACCAG
Seq A exon
NA
Seq C2 exon
CGATCACTGACACTGGAGGATGTGGCCGTGGACTTCACGTGGGAGGAGTGGCAGCTCCTGGCTCCTCCTCAGAAGGCCCTGTACCGGGACGTGATGCTGGAGAACTATAGCAACCTGGTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038487-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGTCCAAAAGGAGACTCA
R:
CCACATCCTCCAGTGTCAGTG
Band lengths:
108-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development