BtaEX0041442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038487 | ZNF613
Description
zinc finger protein 613 [Source:HGNC Symbol;Acc:HGNC:25827]
Coordinates
chr18:58132927-58135099:+
Coord C1 exon
chr18:58132927-58133127
Coord A exon
chr18:58133861-58134006
Coord C2 exon
chr18:58134973-58135099
Length
146 bp
Sequences
Splice sites
3' ss Seq
CATATCCCCTGCATTGGCAGGTG
3' ss Score
7.5
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTCCCTGATACATCAAGATACAAGATACATCAAGTGACATGAGGAGGTTTCCCTTCCTCGATGTCCTCACTTGCAGGGACATCACTGCCTTGGGACTAAGATTTCTAACCCGAAATTGAGGGAAGTCCAAAAGGAGACTCAGGACACATCCTAGTCTTTGTCCAGTTCTCAATATATCAGAAGAAAATGATCAAGGACCAG
Seq A exon
GTGGATTCTTTACCGCTGAGCCAGCAGGGAAGCCCAGGAGTTCACAGCCACAAGTAAATGATCCTGCCACATTGAAGACCGGGTGCAGCCTAATAAATAATAATAAAAAAAACCCTCCAGTGATTACGAAGTACATCTAGCAAAAA
Seq C2 exon
CGATCACTGACACTGGAGGATGTGGCCGTGGACTTCACGTGGGAGGAGTGGCAGCTCCTGGCTCCTCCTCAGAAGGCCCTGTACCGGGACGTGATGCTGGAGAACTATAGCAACCTGGTGTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038487_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSBTAT00000052047fB8034
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTCGATGTCCTCACT
R:
AGTTCTCCAGCATCACGTCCC
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development