BtaALTA0034112-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1517907-1519867:+
Coord C1 exon
chr14:1517907-1518060
Coord A exon
chr14:1519751-1519753
Coord C2 exon
chr14:1519754-1519867
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CTCCTCTGCTGCCCCCACAGCAG
3' ss Score
7.69
Exon sequences
Seq C1 exon
CCAGGAGACTGGTGTGTGTCCTTTCAGGAGGCTGTGACATTTGGTGATGTGGCCGTGCACTTCTCGCGGGAGGAATGGCAGTGTCTGGACCCTGGCCAGAGGGCTCTCTACAAGGAGGTGATGCTTGAGAACCACAGCAGTGTGGCTGGACTAG
Seq A exon
CAG
Seq C2 exon
GATTCCTGGTCTTCAAGCCTGAGCTGATCTCCCGGCTAGAACAGGGGCAGGATCCATGGGTCCTTGACCTGCAAGGAGCAGAGGGGAGAGAGGAAGCCAGGACCACCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456-3-6,3-5,3-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.475
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGAGAACCACAGCAGTG
R:
GGTCAAGGACCCATGGATCCT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development