MmuALTA0020728-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76711542-76718777:+
Coord C1 exon
chr15:76711542-76711668
Coord A exon
chr15:76718661-76718663
Coord C2 exon
chr15:76718664-76718777
Length
3 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
CATTTCCTTTTCTCACACAGCAG
3' ss Score
7.33
Exon sequences
Seq C1 exon
GAGGCGGTGACCTTTGGCGACGTGGCTGTGCACTTCTCTCGAGAGGAGTGGCAGTGTCTGGATTCTGGTCAGAGGGCCCTCTACAAGGAGGTGATGCTGGAGAACCACAGCAGCGTGGCAGGACTAG
Seq A exon
CAG
Seq C2 exon
GATTCCTGGTCTTTAAGCCGGAATTGATCTCCCGGCTGGAGCAAGGACAAGAGCCGTGGGTCCTTGATCTACAGGGAGCAGAGGGGACAGAGGCACCAAGGATTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTGGAGAACCACAGCAG
R:
TAGATCAAGGACCCACGGCTC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: