BtaALTA0034122-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000031106 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr4:113309292-113309797:-
Coord C1 exon
chr4:113309498-113309797
Coord A exon
NA
Coord C2 exon
chr4:113309292-113309373
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CCGTGTATTTCTCTGAGCAGGAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
ATTTCTCCCTGGACAATGGCAGCCACGATTCAGGCCATGGAGAGGAAGATTGAATCGCAGGCCGCCCGCTTGCTTTCCCTAGAAGGCCGAACGGGCATGGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAAAACCTGCTGAGGAACAGAAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAAGGGCGAGGCCCCCAAG
Seq A exon
NA
Seq C2 exon
GAGTGGGGCAAGCTGGACGAGTGGCAGAAGGAGCTGTACAAGCACGTGATGAGGGGCAACTATGAGACGCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031106-4-2,4-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(6.5=2.0)
A:
NA
C2:
PF0135222=KRAB=FE(87.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTGGAGAATGTGGAAAA
R:
TGTACAGCTCCTTCTGCCACT
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development