MmuALTA0020741-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000057691 | Zfp746
Description
zinc finger protein 746 [Source:MGI Symbol;Acc:MGI:1916478]
Coordinates
chr6:48033092-48033604:-
Coord C1 exon
chr6:48033305-48033604
Coord A exon
NA
Coord C2 exon
chr6:48033092-48033173
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
3' ss Seq
CCATGTATTTTTCTGATCAGGAG
3' ss Score
7.08
Exon sequences
Seq C1 exon
ATTTCTCCATGGACAATGGCAGCTACAATTCAGGCTATGGAGAGGAAGATTGAATCACAGGCTGCTCGACTGCTTTCTCTAGAAGGTCGAACTGGGATGGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAATATGGGCTGCTGCAGCGGCGGCTGGAAAATGTGGAGAATCTGCTACGCAACCGGAACTTCTGGATTCTTCGGCTTCCCCCAGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
NA
Seq C2 exon
GAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCATGTGATGAGGGGCAACTACGAGACACTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057691-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=74.0),PF0135222=KRAB=PU(3.3=1.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTGCTACGCAACCGGAA
R:
TGTCTCGTAGTTGCCCCTCAT
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: