BtaALTD0000543-2/2 @ bosTau6
Alternative 5'ss
Description
Bos taurus mitochondrial ribosomal protein S15 (MRPS15), mRNA. [Source:RefSeq mRNA;Acc:NM_001192201]
Coordinates
chr3:110017725-110018796:+
Coord C1 exon
chr3:110017725-110017763
Coord A exon
chr3:110017764-110017806
Coord C2 exon
chr3:110018738-110018796
Length
43 bp
Sequences
Splice sites
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
3' ss Seq
TCTGCGGTTTGTGGTTTCAGTTG
3' ss Score
6.93
Exon sequences
Seq C1 exon
GAAATGCTAAAAATCAAGAAAGAGCAGCTTATGAGCAAG
Seq A exon
GTCGTGGAAAACCCGAAGGACACCAGCTCCCTGGAGGCTCAAA
Seq C2 exon
TTGTTGCCTTGACTGTCAAGATCCGCAGTTACGAAGAACACATGCAGAAACATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024097-9-10,10-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
A:
NA
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTAAAAATCAAGAAAGAGCAGCT
R:
TTGATGTTTCTGCATGTGTTCTTCG
Band lengths:
92-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development