BtaINT0005225 @ bosTau6
Intron Retention
Description
Bos taurus mitochondrial ribosomal protein S15 (MRPS15), mRNA. [Source:RefSeq mRNA;Acc:NM_001192201]
Coordinates
chr3:110017722-110018796:+
Coord C1 exon
chr3:110017722-110017806
Coord A exon
chr3:110017807-110018737
Coord C2 exon
chr3:110018738-110018796
Length
931 bp
Sequences
Splice sites
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
3' ss Seq
TCTGCGGTTTGTGGTTTCAGTTG
3' ss Score
6.93
Exon sequences
Seq C1 exon
AAGGAAATGCTAAAAATCAAGAAAGAGCAGCTTATGAGCAAGGTCGTGGAAAACCCGAAGGACACCAGCTCCCTGGAGGCTCAAA
Seq A exon
GTTGGTCGGGGGGGCCCTTGGGGAGTCGGGGTGCAGGATAGTCTGCTAGCTGGTACTTGGATTCAGGTCCCTCATCTGCATATACACTGGTATTAGATGTGGCTTAATAAAGGGAGAGACAGGAAGGACCAAGGAAAACTGGACTCTGTTTTCTGAGCTCTGTGATGTAGTCATATCTCTATGAGCTCAGGTGACATTCCTAAGGAGCTTGTTCCTCTCTGTGCTCTGCGGCTAAGGTGATGTGAAAGGGCGCGTGGTCAGGGCCAATGTCCCCGCCGCACTCTCTGCAGTGCTCCCAGGACTCAGTGTACTGCACACGGGAAGGGCCTTCTGTAGTGACAGCCTCTCCTTGGGGCCATCTTCTGCTTTTGCCTTTGTCCCTATCTCTGCAACACAGGCTTGAGCCAAACAAGAGGATACCTGAAGGAAGGATGTTCTGAGGCTTTAAGAGATGAATGGGGAGCTGATAATTCTGAAAACTCATTAGTGAAAACACAGAGATAAGGATGGCAGCTGGGGGAAAGAGGCAAGGAGGAGACCCTTGACAGTTTGGGGATCTTCAGTTATTGCCTTAGCAAGGACCTCGGGGGCTGTATTGAATCTGTAACCATGAGAGCAGGCATTCCAGACTAAGGCCTGAATTTAATAGGAATGCTCTAAAGTTTTACCATTAAGAATGCTGATTTGGGGGTTTGGGGTTTGGCAATGAGACCTTCATAAGATTAAGGCACTTCCTTTCCTCAGGCTTTGCATTCTAAAGGCAAGATATTCCAGACTTTTGAGCTCTTAAAATTCAGACTGCTCTGGGAATGGTGGAGAGCGGTACAGGAGCTTCGGTGATTGTTATTCCTTGAGGCCTTAGGACATAACCGAGGTCTGGCCCTTCCTTCCTCTGTGCCTGTCTCTCATCCTCTGCGGTTTGTGGTTTCAG
Seq C2 exon
TTGTTGCCTTGACTGTCAAGATCCGCAGTTACGAAGAACACATGCAGAAACATCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024097:ENSBTAT00000033238:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
A:
NA
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]