DreINT0097850 @ danRer10
Intron Retention
Gene
ENSDARG00000099429 | mrps15
Description
mitochondrial ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-040718-188]
Coordinates
chr16:36097358-36097611:-
Coord C1 exon
chr16:36097527-36097611
Coord A exon
chr16:36097417-36097526
Coord C2 exon
chr16:36097358-36097416
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATGTTCTTGTTCCATTGCAGTGG
3' ss Score
9.36
Exon sequences
Seq C1 exon
AGTGAAAAACTGCGTTTGAAAGAGGAACAGCTTATTGCTAAGGTGCAGAGGGATGAGAATGACCGCAGTTCAACCGAAGTCAAGG
Seq A exon
GTAAGTTCTCTTTTTGGTCTTTCTTAAATGATTGACAAAGTTGTGGTTTTGACAATACTGGAATCTCAGAAAATGACTCGATGATGTTGAATGTTCTTGTTCCATTGCAG
Seq C2 exon
TGGCGATTTTGACAGCACGCATTCGCAACTTCCAGGAGCACTTGCACAAACACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099429:ENSDART00000171592:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF097844=L31=FE(38.9=100),PF0031217=Ribosomal_S15=PU(48.9=79.3)
A:
NA
C2:
PF097844=L31=FE(26.4=100),PF0031217=Ribosomal_S15=FE(40.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGCGTTTGAAAGAGGAACA
R:
CTTGGGGTGTTTGTGCAAGTG
Band lengths:
138-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]