MmuINT0100903 @ mm10
Intron Retention
Gene
ENSMUSG00000028861 | Mrps15
Description
mitochondrial ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:1913657]
Coordinates
chr4:126051325-126053558:+
Coord C1 exon
chr4:126051325-126051409
Coord A exon
chr4:126051410-126053499
Coord C2 exon
chr4:126053500-126053558
Length
2090 bp
Sequences
Splice sites
5' ss Seq
AAAGTTGGT
5' ss Score
1.99
3' ss Seq
TCTGCGGTTTGTGGTTTCAGTCA
3' ss Score
5.87
Exon sequences
Seq C1 exon
AAAGAGAAGTTAAAAATCAAGCAAGAACAATTGATGAACAAGATTGTGGAAAACCCTGAGGATTCCAGAACCTTGGAAGCTCAAA
Seq A exon
GTTGGTCCAGGGGCCCTTGGTAGTGGGGGTGCACAGGAGTCTGCTAGCTGGTACCTAGCCTAGGCTCTTGATGTGGCTTGGGAAGGGGAGAAGCATGCTGGGACTCTGGATCCCAAGTCCAGTGATGCTAGAGTTAACAGCTGAGTCCTGCCCATTGCTCTGTGTGAGGGCAAACAGGTCATCTGTCTTCTCTGGAGTCTCTGCTTCCAGAGCAGAGTCTAAAGATGGAGCTGTCTGGGGACAGGGCTGAAGTTCTGTGTTCTACTTTGTGGTGAGATTGAGACGTTAGAGAATGCATACATACTTTGGAAACAAAGATTAGGCTACTAGCAGCGAGACTCACGTCTGTGGAGGCTGTCACGCCCACGAGCAGGGACCATTTCCAGGTTCCTGTTTTGGTTTCCAGCTGGAGTTGGCAGTAGCCCTCATTAGATGTGAGTGACAGCCTGCAGCCTGCCTCTTGAGTAGAACCAAGAAGTTGCAGGGGAGTGACTTGGTGGCCTATGCGGTGTCTGCAGGGTTTCTTCCCAGCTGCCTTCGGCCTGCATTACAGCTGGTATTACCTCCTGTCTTGGAGCCTCAGTCCCTTTTTTTTACAACTTTGCTAATGTGTGAGTGTTTTGCCTGCGGGTATGTCTGTACACTATGCCTAGTGCCAGCAGAAGTCAGAAAAGGGCTTCGGATCCCGTGAACTGGAATTACAGACAGTTGTGAGCCACCATCTGCTTGGACTGGAACTTGGGACCTCCTGAAGAGCATCTTAATTCTGTGGCATCTCTCCAGTCATATAAATGAGACGTTTTAATTCTGAAACCTTAATGGAAACACAGAGAAAAAAAAAAGAGTAAAATTTTGAGAGTTGGCTTTTATTATTATTACTGTGTGTGGAAGGATATGACCTGTGAGTGCATGTATACGTGTGCCACACAGGACAATTTTAGATGTCCTTCTGTCCTTCCACCATGGATTCCAGGGATTGTACTCAGGTGTCACATTTGTGCCACAGTACCTGTACCCACTGAGCACCCCTGAGTCCTCTTGACAGTTTTAGGTTTTATTTCAATGATTAGCTGGGACCTCTAGTACAACAGTGACTATTAACCATGACAGCATGCTAGTGTTCCTGAATTTAATACTCCTGCAAGTGTGTTCAACCTGAGGCCTGCAGGCTGCATGTGCCCCAGGGAAGCCATGAATGCAGCCCAGCTCAACACAAAATCATAAGCTTAGTTAAAACAGGAGGAGGTGTTTTGTTTTGTTTTGTTTGGTTGGTTGGTTGGTTGGCTTTGTTGTTTTTAGGGTGTTTGTTTCCTTTTAGACCAGTGGTTCTCAACCTTCCTAATACTGCAACCCTTTAATACGGTTCTTCATATTGTAGTGACCCCCAACCATACAATTATTTTGTTGCTACTTCATAGGTGTAATTTTGCTACTGTTATGAATTTTAATGCAAATATGATATGAGACCTCCAAAAGGATTTCGACCCACAGAGTTGAGAGCCACTGTTTTAGATACTGTGTCACTATGTAACTCCAGCTGGCCTGAAAACTTGCCATGTCAACACCACACAAAGATATACCTGCCTGGGTCTCCATTATTTTTGTAACTGAAGTGCATGGCTCTCAGACATGAGCTTTGTAGATGAAAGCATTGTATCGCAAGGTCAAAAAACAGAACTACAGTGGTGGCCATTGAGGGTGCTGCTCCACAGCCAAGCCCAGGTCACACACCCATAATTCTAGTAAAGGAAGAAAGGCAAGCTGGTTACAAGTCTGGGCTACATAGCACGTTTAAGGTCAACCACCTTCTCCCCCCCCCCCCCCCCCAACGCACATTCACACACAATGCTATTTGCTATGGTAGATAATGGCCTTTATGGATTCAACTATTTCCTTTTCTTGAGCTTGCTTTTCTAGTAGAAAGATGATCCACAGATTTTCTTTGAGAATTTGCAATTCAGAGTGCTGTAGGATTAGAGCTATACAAAAGCATCGCTGATTGTTACTCCTTTGGTTCTGAAATACGAGGTGGGTCTGGGCCCTCCCTTCCTCTATGCCCAGCTCTCATCCTCTGCGGTTTGTGGTTTCAG
Seq C2 exon
TCATTGCCTTGACTGTCAGGATCCGCAATTATGAAGAACACATGCAGAAACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028861:ENSMUST00000030675:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
A:
NA
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types