GgaINT1018219 @ galGal4
Intron Retention
Gene
ENSGALG00000027648 | MRPS15
Description
mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
Coordinates
chr23:3973565-3974949:+
Coord C1 exon
chr23:3973565-3973649
Coord A exon
chr23:3973650-3974890
Coord C2 exon
chr23:3974891-3974949
Length
1241 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTTACGTCTGTCTTTTACAGCTG
3' ss Score
11.91
Exon sequences
Seq C1 exon
AGGGACAAAATGAAGATAAAGATACAGCAGCTGGTAGAGAAGGTCAGGAGGTCTCCCAGTGACAATGGCTCCTTTGAGGTGCAAA
Seq A exon
GTAAGTTAGAAGAAACAGAAGCGTATTGTTGGCAGATGATAGTTCACTTTGCTTTTATTCAGCTGTTCCCACCCCATCACTTCAAGTTTCGTGTAGCAACAAGAAGAATCTCTTTCAGCAGAGCACCTGGGAGGCAGGTGGACCTGCTCAGGTTTTGGGAATGTTGCCAGGCAATGCACACACTCACGGATAGAGGGAGCAGTTCGAGGACGTTGTTAGAGGTGCCGAAGACATCCAAAAGGTGCCATGAAAACAGGTTGCTGCCTGCTGACAACAGGGACATTTTGTCTCAGTTTTTTTTTATCTATACAAAGGTCTTTACGGGGTGTGTTGGAAAGTCACTTAAGCCTTTATGGTACCATCATGTCATTACTCAATGTGATGTGAAACTGCACCTTTTGTCAGTGTTTGCTCATAAGGGAGTCTTTTATGGCTCTGCTTCATGTAGTTAGGGTAAGGCTTCTCTGAAATAGTCCATGCTGCTGCAGCCCTTTTACAGTGAGGTACATCTGTCAGTTTTGTTTCCATGGCTTCTGCACCTGCAGCGTTCCATCTATGGCTGAATGAATTGGGCATGAAAAGAAAAGCAAATGGCAGAACTTTCGTTGCAAGATCACTCTCTGAGTTTGGAAATGAATTTTTTTCCTGCCCGTATACAACTTTTTTTCCTGAAATCATAATGGATGGGGGAAGAGCCAGGACAGAGTTGCTGCAGAACCATTCACTTGATAGAGTATAATAATTTCTGTAATTTTTGAAGGGATTCGTTGATCTCCTCCCTATAAAATACCTAGCCTTGCACTAAAGCTTAATGTAGTTCGGCAGCATTTTCCACATTGCACCTGTAAAAGATAACACTGAAACAAAATGATAGATTTAGCTATGGAAACCAGATTTCTTTCTCCACAGGCAAGCTCTGTCTGAAGCACAGGGCAGAGATAAAGGCCACGTAAAGTCACCAGTGTTTAAATGAGGCGAGGCACCTGCCTTACAGAGAAAACCATATGATTAGTTGTTGGAATTGTAACTTCTAATCAGGTAGCTTTATAATGGTAATAGTTGTTATTTGAGTTTATGTAGGTTGCATTTTGTGTTTACCATTTCCTCTGAAGGCTGTGTGGAAGTACTTGCTGTTGTGCAGTGGGTACCCATAAGAACAGCAGTGGTAGTTTGAAGGGAATGCAGATGATACTGCCTCACTCTGCTGCTCTCACACAGCTCCTTACGTCTGTCTTTTACAG
Seq C2 exon
CTGCTATACTGACTGCCAAGATACGCACTTTTGAGGAACATCTTCACAGACATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027648:ENSGALT00000045469:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0031217=Ribosomal_S15=PU(30.2=89.7)
A:
NA
C2:
PF0031217=Ribosomal_S15=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]