HsaINT0105264 @ hg19
Intron Retention
Gene
ENSG00000116898 | MRPS15
Description
mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:14504]
Coordinates
chr1:36923524-36926377:-
Coord C1 exon
chr1:36926293-36926377
Coord A exon
chr1:36923583-36926292
Coord C2 exon
chr1:36923524-36923582
Length
2710 bp
Sequences
Splice sites
5' ss Seq
GAAGTTGGT
5' ss Score
-0.09
3' ss Seq
TCTGTGGTTTGTGGTTTCAGTTA
3' ss Score
6.99
Exon sequences
Seq C1 exon
AAGGAGATGCTAAAAATCAAGCAAGAACAGTTTATGAAGAAGATTGTTGCAAACCCAGAGGACACCAGATCCCTGGAGGCTCGAA
Seq A exon
GTTGGTCGGGGACCCTTGGGGAGTGGGGGTGTAGGGAAGCCTGCTAGCTGGGACCTGATCTAGGGCTCTTGTCTACAAGCACATGCACATGGGCTGGGGAAAGGGAGAGACATGAAGGACCTAGGGCAATGAAAATTGGACCCTGTATCCCAAGCTCTGATGCTGGAGTCAACACCCAGTTGGACCTTGTACCACTGTGTGAGCTTGGGTAAGTCACCAACCCTCTCTTGGAGCCCCTGCTTCCTCATCTGGAAATGGGGGAATAAGGGAGAGCAGAGCAGAGGTAATGTTACCCACCTCATGGCAGCATTGTGAGAGGCAGCTAGGGGATGTAAACACACCTTGGAAACTAAAGCTCACGATGTGTGATAATAATAGTAAGACTAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGCAGGTGGATCACAAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCTAGCTACTGGGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCTCGCCTGGGCAACAGAGCGAGACTCCGTCTCGAAAATAAAAAAATAAGACCAACATTTTGAACCCTCTTGTGCCAGACAGACACCATGGTGCATTCCCAAGGGAATAATGTTGCTACTTTGGTTCAGGCTAGAACTGGCAGTAGTCCTCATTAGATGTGAGTGAAAAGCACCACCATTTCCCCCTCTCTCTGGGTGCAGTTTCTCTTCATTGCCCACTGAGAGCAAGTGAGGTAGACTAGTGGACCTGCAGAGGATCTGCACACTTTCTCTCCTTTGCCATTGGCCTATATTATAGCCTCCTCCTCCTCTTCCACCCTCCTGCCTTCATTCTTCTCCCTTCATTCTTTTCTTCTCCCTCTGCCAGGGATTAAAGTCTGGTGAGTTCATCTTGGATACTAAAACCCCATTGAGAACTGGACTCAAGGGTCCTCCATAGCCTCTTTTGAGAAGATGAGTTTCAGCTTCCCTTGCCCTGCTAAAGCCCTGGGCTAGGGACCAGCTCAGCCACAAAAGGCCTGCTTATCTTTCCTCACCTGTTTCTGCATTATCACTACTGAAATCCCCAGGTTGGCAGGAACAAATGGCCTGGACTGGCAAGGTGGTTACTGGGGTCGTCTTTAAGCACAAGTTTTGATTCTTTTTTTTTTTTTTTTTTTTTGAGACCGGATCTCACTCTGTCACTCAGGCTGGAATGCAGTCAGTGGCAGGTGTGATCATGGCTCACTACAGCGCAACTTCTGGGGCTCCAGCAATTCTCCTACCTCAGGCTCCCAAGTAGCTGGGACCAAAGGCATGCACAACCATGTCAAGCTAATTTTTGTGTTTTTGGTAGAGACAGGATTTTGTCATATTGCCCAGGCTGATCTCGAACTCCTGAGCTCAAGTAATTCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGTCACCACGCCCAGCCCACAGATGTCACTTCTGCCTTTCCATTATTACTCAGTTTTCTGAATGCCAGTTGCTTCTAGCATAGTGCCTGCTCTAGAGAACCCCTCAGGAACCAAGGCCTATCTTTCTGTGTTGTTCCACTCTACACCTAAGTTGCTGTGATGGAGCCATGTGGTCGGGGTCAGGGTTCCCACTGCACTTTCTGCAGTGCTCCCAGAACTCAGTATGTACTGGGAAGGGCCTGCTGTCGTGACAGCCTCTCTTTGGGGCCAGCTTCTGCTTTTGCCCCCATCTTTGCAGTACAGGGGGTAAATTAAACAAGAGGATGCCTGAATGAACGATATCCTGGGTTCTTGAGAGACAAGTGGGAGCTGATAATTCTGAAAATTCATTAGTCAAAGCATGGAGATAAAGGTGGCAGCAGGAAGGGGAGAGGCAAGGAGTAGACCCGTGACAGTTTTAGAATCTTATTTGTGCCAAAATACTTTACTGCATTGGCTTGGACCTCTAATACAATGTTGAATTGTTAACCATGATAGCACTGTATCCTGGTCTAATTCCTGAATTGAATGGCTAGTCTTACCATTAAGAATGCTATTTGCGGCCAGGCACGGTGGCTCACACCTGTAACCCCACCACTTTGGGAGGCCAAGGCAGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATAGAAAAATTAGCCGTGTGTGGTGGCGGGCGCCTGTAATCCCAGCTGCTCTGGAGTCTGAGGCAAGAGAATCACCTGAACCTGGGAGGCAGAGGCTGCGGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAGAATGCTATTTGCTATGATTTTTGGATGATATCTTTATAATATTAAGGGATGTCCCTTCCTTGGATTTTGCTTTTTAAGGGAAGGTAATGTCTAAGATAAGCCTTTGAAATCTTGAAATTCAGAGTGATTTGGGATTTATAGAGAGCTGTACAGAGCATTGGTGATTGTTATTCCTTGAGTTCTTAAAACGTAAACCAGGCCTGGGCCCTTCCTTCCTCTGTGCCCAACTCTCATCCTCTGTGGTTTGTGGTTTCAG
Seq C2 exon
TTATTGCCTTGTCTGTCAAGATCCGCAGTTATGAAGAACACTTGGAGAAACATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116898-MRPS15:NM_031280:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0031217=Ribosomal_S15=PU(27.7=79.3)
A:
NA
C2:
PF0031217=Ribosomal_S15=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)