BtaALTD0000718-2/2 @ bosTau6
Alternative 5'ss
Description
NA
Coordinates
chr18:60331211-60332754:+
Coord C1 exon
chr18:60331211-60331311
Coord A exon
chr18:60331312-60331530
Coord C2 exon
chr18:60332679-60332754
Length
219 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CGATTGTTTCCTCTCCGCAGATG
3' ss Score
12.25
Exon sequences
Seq C1 exon
TCCTGACGCGTCTCAGCGGTCCTGCCCCCGGCTCAACGGTGCGCATGCGGAATCCCCTCCAGACACGGAAGCGGATCCCGAGGAAAGACTGACGCGCTCGG
Seq A exon
GTGAGTGACTTGATTGCTTAGATCGTTACTGCGCTCTGTGGAGTTCAGGCCCCCTCCTCCACAGCTGGGTTTCGGGCGTTTCCCAGTAAAGTAAACCTCTGAACCCGGTTGTCGCTCTCGCTCTGAGACCACCCCTACCGCCTGTGGTGGCGTCGCCACAAGCCTCGGTTCGGTCCCGGGAGTCCGGGCCCGGTTCCGGTTAAAATCGCTCCGACTCAG
Seq C2 exon
ATGTTAAACGATGGGCTGGATTTGTTACCGATCTGAGTTCTTGGGCTCTACTCAATAGGAACTGATAACAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038674-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAGCGGTCCTGCCC
R:
TGGCCTGTTATCAGTTCCTATTGA
Band lengths:
167-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development