BtaEX0001226 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:60330959-60336496:+
Coord C1 exon
chr18:60330959-60331311
Coord A exon
chr18:60332679-60332754
Coord C2 exon
chr18:60336433-60336496
Length
76 bp
Sequences
Splice sites
3' ss Seq
CGATTGTTTCCTCTCCGCAGATG
3' ss Score
12.25
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCCAGCGATAGGGCGCTTGGATGGTCAGAGGGTCTGTGTCCATCCGCTCGTGTTTTCACATAAACCCTTGTCAACCGGAAGTGCCCTGGCTCTCTAATTCCGCACAGAGCCTGGCTCCAAAGGACACCGAACACGTTCAAAGGATCCAAAGTATAAACGCAGAACCCGTTCGGAGAGGAAGACACAAGAATCTCCCAGGACGAGACCACGTCTGCAGGCTCCGCCCCTCCAGGGACACAGCCTCCTTCCATCCTGACGCGTCTCAGCGGTCCTGCCCCCGGCTCAACGGTGCGCATGCGGAATCCCCTCCAGACACGGAAGCGGATCCCGAGGAAAGACTGACGCGCTCGG
Seq A exon
ATGTTAAACGATGGGCTGGATTTGTTACCGATCTGAGTTCTTGGGCTCTACTCAATAGGAACTGATAACAGGCCAG
Seq C2 exon
AATAATCTTACCTGAAGAATCTAAGAAGAAAAAGAGGAAAGAAGGAAGAATGGAGCTTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038674_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCTCCTTCCATCCTGA
R:
CTGGGAAAGCTCCATTCTTCCT
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development