BtaALTD0001012-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62116723-62117665:+
Coord C1 exon
chr19:62116723-62116833
Coord A exon
chr19:62116834-62116867
Coord C2 exon
chr19:62117490-62117665
Length
34 bp
Sequences
Splice sites
5' ss Seq
CGGGCAAGT
5' ss Score
2.99
3' ss Seq
GCTGACCGTTTCCCTTCCAGGGT
3' ss Score
10.53
Exon sequences
Seq C1 exon
GCCTGGTATTGGAGGTATACGAAGGCCAGATCACGGGCATCCTCGGTCACAGCGGAGCTGGGAAAACCACGCTGTTAAATATACTCAGCGGACTGTCGGCCCCAACGTCAG
Seq A exon
GTGAGAAGACAGGCACGGCAGGACACGAGCACGG
Seq C2 exon
GGTCCGTCACCATCTACAATCACTCACTTTCAGAAGCGGCTGACCTAGAACACATCAGCAAGCTCACTGGCGTCTGTCCACAAGCCAACGTGCAATTTGGTTTCCTCACCGTGAGAGAAAACCTCAGGTTCTTTGCTAAGATAAAAGGGATTCAGCCACATGAAGTGGAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-18-19,19-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(39.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAAAACCACGCTGTTA
R:
CCAGTGAGCTTGCTGATGTGT
Band lengths:
125-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development