Special

ENSBTAG00000006896 @ bosTau6

Biotype
protein_coding
Gene Symbol
ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62099290-62151579:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
83.81
18.08
0
Alternative 5'ss
34
chr19:62116834-62116867
+
16.19
18.08
0
Alternative 5'ss
0
NA
+
92.28
19.19
0
Alternative 5'ss
154
chr19:62129364-62129517
+
7.72
19.19
0
Exon Skipping
210
chr19:62109900-62110109
+
7.51
10.53
0
Intron Retention
677
chr19:62140065-62140741
+
30.05
32.71
0
Intron Retention
1113
chr19:62140834-62141946
+
34.35
31.3
0
Intron Retention
993
chr19:62147471-62148463
+
17.12
41.26
0
Intron Retention
1042
chr19:62148707-62149748
+
11.35
24.48
0
Intron Retention
646
chr19:62150172-62150817
+
20.46
26.97
0
Intron Retention
1671
chr19:62109355-62111025
+
21.96
19.67
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000141338 ABCA8 1-to-2
Human hg38 ENSG00000154258 ABCA9 1-to-2
Human hg19 ENSG00000141338 ABCA8 1-to-2
Human hg19 ENSG00000154258 ABCA9 1-to-2
Mouse mm10 ENSMUSG00000020620 Abca8b 1-to-3
Mouse mm10 ENSMUSG00000041797 Abca9 1-to-3
Mouse mm10 ENSMUSG00000041828 Abca8a 1-to-3
Mouse mm9 ENSMUSG00000020620 Abca8b 1-to-3
Mouse mm9 ENSMUSG00000041797 Abca9 1-to-3
Mouse mm9 ENSMUSG00000041828 Abca8a 1-to-3
Rat rn6 ENSRNOG00000059326 Abca9 1-to-1
Chicken galGal4 ENSGALG00000021395 3-to-2
Chicken galGal4 ENSGALG00000021399 3-to-2
Chicken galGal3 ENSGALG00000021399 3-to-1
Zebrafish danRer10 ENSDARG00000074041 abca5 4-to-1