BtaINT0011247 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62148612-62149868:+
Coord C1 exon
chr19:62148612-62148706
Coord A exon
chr19:62148707-62149748
Coord C2 exon
chr19:62149749-62149868
Length
1042 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
TTTCCTTGGCCTCACTTCAGGCA
3' ss Score
7.44
Exon sequences
Seq C1 exon
CTGAGCTTCGCGCTGAGCATCCTGGGGAGCCCGGGCCTGCTGCTCCTGGATGAGCCGACCACAGGGATGGACCCCGAGGGGCAGCTGCAGACGTG
Seq A exon
GTGAGGGGCGAAGGGGCACCCCTGAGCGAGTGTGTCACCTGTAACGGCTGACCCTCAAAAACACTGCTGGTTGTGTTAGATCCAGTGGTGAGAGTGGAGATTTTTCCTGTGCTGACAGATGTCCTTCCCCTTGGACTCACTTGTATGAATGCACCTAAGCAACCGCTTTGCAGTTGTCATTTGGAAGTCTGAAATTTCCCACTAAAAATGTCCTTGACGCAATAAAAAAAGAAAAAAAAATTAAACCGTTGTTTATAAAGGGAAAGATGTCCACATTACCAGAAAAAAACAGTATGAAGAAAAAAATCCTGATGTCATATCACATCCAGTTTTTATTAAGGAGAAAAAGGTAATTGTAACTCAATCCTCACTCTAAAAATTTCATTTTCATCTTAGCTCTTCCAAGGAAGTATTCAAGACTCACTTTTATATTTAATCAGATCAATCTATTATTAAGTTTAAATCTTTTGCAACATCACCCGATACATAATTCTTATGGAGGGAAGAATAAATTCATGTATTCTCTTTTTTGACATGCAAATTATTCATTTTATCTTATTTACAAAATCTTTTATTGAAGTATAACTGATGTATAATATGATATTAGTTTCAGTTGTACAATATAATGATTCAAAAATTTGTTATAGATTATACTCAATATGTTCTCCAATCACTTGAAGAATTTTCTAAAATCTGTCATTCTGGGCTTTGGGGCATATGTCATTATCATCATGCTTTTACATAAGGTCTCCTCTTTCCTCCTACTGCCTTCTCATAAATATTATTGAAATGCAGCGTCCCTGTAGACAAGCTTGTACCTACTATCATTCCCTGCATTCAGCTGAAGCCCTGCTCCGAGTGAGACACCCTGTTTGCTTGGTTCTTTCCATGCCCGTTGTCCCTGCGAACCTCCTGTCTTTGAGGAGTGAATCTGAATTCGCTCTTTGTTTCATCAGTGCCCGTGGAAACGCCGTTATGTTATTTTCACACCGTCTGGAGCATCCCCACTGGTTGATGTTTATTTTCCTTGGCCTCACTTCAG
Seq C2 exon
GCAGCTGATCCGGGCCTCCGTTAGAAACACGGCGAGGGGCGCCCTGCTGACCACCCACTCCATGGCCGAGGCGGAGGCCGTGTGCGACCGCGTGGCCGTCATGGTGTCCGGGAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(14.2=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATCCTGGGGAGCC
R:
GGCTCCCGGACACCATGA
Band lengths:
198-1240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development