Special

ENSG00000154258 @ hg38

Biotype
protein_coding
Gene Symbol
ABCA9
Description
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr17:68974488-69061064:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
14.25
28.97
0
Alternative 3'ss
4
chr17:69026464-69026467
-
85.75
28.97
0
Alternative 3'ss
0
NA
-
91.86
100
0
Alternative 3'ss
47
chr17:69044601-69044647
-
8.14
100
0
Exon Skipping
208
chr17:69049283-69049490
-
93.54
32.56
0
Exon Skipping
95
chr17:68984885-68984979
-
90.09
53.94
0
Exon Skipping
114
chr17:69007759-69007872
-
95.28
32.5
0
Exon Skipping
139
chr17:69026976-69027114
-
99.36
31.11
0
Exon Skipping
120
chr17:68995895-68996014
-
97.11
96.77
0
Intron Retention
9726
chr17:69051140-69060865
-
8.5
34.78
0
Intron Retention
190
chr17:69027450-69027639
-
8.34
28.02
0
Intron Retention
508
chr17:69026468-69026975
-
13.56
42.22
0
Intron Retention
2023
chr17:69024354-69026376
-
23.52
100
0
Intron Retention
1540
chr17:69049491-69051030
-
11.27
42.02
0
Intron Retention
2810
chr17:68993085-68995894
-
34.25
72
0
Intron Retention
749
chr17:68992267-68993015
-
19.85
36.96
0
Intron Retention
1217
chr17:68990958-68992174
-
18.58
50.52
0
Intron Retention
694
chr17:68989119-68989812
-
27.52
92.98
0
Intron Retention
2702
chr17:68986325-68989026
-
11.75
36.36
0
Intron Retention
1035
chr17:68985129-68986163
-
14.13
36.65
0
Intron Retention
73
chr17:68984980-68985052
-
31.04
29.2
0
Intron Retention
7687
chr17:69035802-69043488
-
17.44
49.96
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000041797 Abca9 1-to-1
Mouse mm9 ENSMUSG00000041797 Abca9 1-to-1
Rat rn6 ENSRNOG00000059326 Abca9 1-to-1
Cow bosTau6 ENSBTAG00000006896 ABCA9 2-to-1
Chicken galGal4 ENSGALG00000021395 4-to-2
Chicken galGal4 ENSGALG00000021399 4-to-2
Chicken galGal3 ENSGALG00000021395 4-to-2
Chicken galGal3 ENSGALG00000021399 4-to-2