HsaEX6024421 @ hg38
Exon Skipping
Gene
ENSG00000154258 | ABCA9
Description
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr17:69026377-69027449:-
Coord C1 exon
chr17:69027330-69027449
Coord A exon
chr17:69026976-69027114
Coord C2 exon
chr17:69026377-69026467
Length
139 bp
Sequences
Splice sites
3' ss Seq
AGGACTTTCCTCCTGTCCAGGTT
3' ss Score
7.7
5' ss Seq
CGGGTAATT
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTACAACGAGTTGTACAGGAATTAGAAATGGAAAATATTCAAGACATCCTTGCTCAAAACTTAAGTGGTGGACAAAATAGGAAACTAACTTTTGGGATTGCCATTTTAGGAGATCCTCAA
Seq A exon
GTTTTGCTATTGGATGAACCGACTGCTGGATTGGATCCTCTTTCAAGGCACCGAATATGGAATCTCCTGAAAGAGGGGAAATCAGACAGAGTAATTCTCTTCAGCACCCAGTTTATAGATGAGGCTGACATTCTGGCGG
Seq C2 exon
ACAGGAAGGTGTTCATATCCAATGGGAAGCTGAAGTGTGCAGGCTCTTCTCTGTTCCTTAAGAAGAAATGGGGCATAGGCTACCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTTGTACAGGAATTAGAAATGG
R:
AATGGTAGCCTATGCCCCATT
Band lengths:
202-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains