GgaEX6016357 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8196344-8197173:-
Coord C1 exon
chr18:8197054-8197173
Coord A exon
chr18:8196654-8196792
Coord C2 exon
chr18:8196344-8196434
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGATCTCATCCCATGTGCAGGTG
3' ss Score
8.85
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGCAAAACATTTTGGAACTGCTGGATATCAGTAGTGTGCAAGACACTCAAGCTGAGAAACTGAGTGGTGGGCAAAAAAGGAAGTTATCCATTGGGATAGCCATGCTTGGGAACCCACAG
Seq A exon
GTGCTGCTCCTGGATGAGCCAACGGCAGGGCTGGATCCTCTTTCCCGGCACCATGTGTGGAACCTCCTTAAGGAGCACAGAGCTGGCCGGGTGATCCTCTTCAGCACCCAGTTCATGGATGAGGCCGACATCCTTGCGG
Seq C2 exon
ACCGCAAGGCTTTTATCTCACGTGGGAGGCTGAAGTGTGTGGGCTCCTCTTTGTTCTTGAAGAATAAGTGGGGGATCGGCTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAACATTTTGGAACTGCTGG
R:
CTTAAGTGATAGCCGATCCCCC
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]