RnoEX0004935 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98277035-98278494:-
Coord C1 exon
chr10:98278375-98278494
Coord A exon
chr10:98278025-98278163
Coord C2 exon
chr10:98277035-98277125
Length
139 bp
Sequences
Splice sites
3' ss Seq
CATGTGTCACTTCCCTCTAGATT
3' ss Score
9.82
5' ss Seq
CTGGTAGTT
5' ss Score
2.03
Exon sequences
Seq C1 exon
GTGCAAAGGGTTTTGCTGGAATTGGAAATGAAAAATATTCAAGATATCCTTGCTCGAAACCTAAGTGGTGGACAGAAGAGAAAGCTAACTTTCGGAACTGCCATTTTAGGAGATTCTCAG
Seq A exon
ATTTTCCTACTGGATGAGCCCACTGCTGGGCTGGATCCCTTTTCAAGGCACCGGGTGTGGAATCTCCTGAAGGAGCGCAAAGCAGACCGTGTGGTCCTCTTCAGCACGCAGTTCATGGATGAAGCTGACATTCTGGCTG
Seq C2 exon
ACAGGAAAGTGTTCATCTCCAGGGGGAAGCTGAAGTGTGCAGGCTCATCTCTCTTCCTGAAGAAGAAATGGGGCGTTGGGTATCACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'18-20,'18-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGTTTTGCTGGAATTGGA
R:
GTGATACCCAACGCCCCATTT
Band lengths:
203-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]