MmuEX1002882 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109947065-109967148:-
Coord C1 exon
chr11:109967029-109967148
Coord A exon
chr11:109966681-109966819
Coord C2 exon
chr11:109947065-109947184
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGCCACTTCTTTCCTCTAGATT
3' ss Score
10.55
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
GTGCAAAGGGTTTTGCTAGAATTGGAAATGAAAAATATCCAAAATATCCTTGCTCAAAACCTAAGTGGGGGACAGAAGAGAAAGCTGACTTTTGGAATCGCCATTTTAGGAGATTCTCAG
Seq A exon
ATTTTCCTACTGGATGAGCCCACCGCTGGCCTGGATCCCTTTTCAAGGCACCGGGTGTGGAATCTCCTGAAGGAGCGCAGAGCAGACCGTGTGGTCCTCTTCAGCACGCAGTTCATGGATGAGGCTGACATCCTGGCTG
Seq C2 exon
ATCACTGTGTTCTCAGTGGCTGTAATATTGCTGGCTTTTGATGTGGATGGTACACAGTACTACATCATCTTTTTGATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGTCTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX3-7/24=6-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
PF126982=ABC2_membrane_3=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGTTTTGCTAGAATTGGA
R:
GCAAAGACAAGATCAAGCATCCA
Band lengths:
235-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types