BtaEX6091173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62117856-62119668:+
Coord C1 exon
chr19:62117856-62117975
Coord A exon
chr19:62118696-62118834
Coord C2 exon
chr19:62119578-62119668
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGGGCTTTCCTGCTGTGCAGGTT
3' ss Score
6.87
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCCAACGGGTTTTACAGGATCTGGAGATGGGAAACATTCAAGACGTTCTTGCTCAAAATTTAAGCGGTGGACAAAAAAGGAAACTGACGTTTGGGACTGCCATTTTAGGAGATCCGCGG
Seq A exon
GTTTTGCTGTTGGATGAGCCAACTGCGGGGTCAGACCCTCTTTCGAGACACCGGGTGTGGAACCTCCTGCGAGAGAGGAAGTCAGACCACGTGGTCCTCTTCAGCACCCCGTTCATGGATGAGGCTGACGTCCTGGCTG
Seq C2 exon
ATAGAAAGGTGTTTATGTCCAACGGAAGGCTGAAGTGTGCGGGCTCTTCTCTATTCCTGAAGAGGAAATGGGGCATCGGCTACCATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAACGGGTTTTACAGGATCT
R:
CTTAGATGGTAGCCGATGCCC
Band lengths:
211-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]