MmuEX6090844 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110005513-110006512:-
Coord C1 exon
chr11:110006393-110006512
Coord A exon
chr11:110006057-110006195
Coord C2 exon
chr11:110005513-110005603
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACGTTTTCTCTGCTGTTCAGGTT
3' ss Score
8.85
5' ss Seq
CCGGTAACT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GTACAACAAGTTCTACAGGACTTAGAAATGGAAAATATTCAAGACATTCTTGCTCAGAATTTAAGTGGCGGACAAAAAAGGAAGTTGACTCTTGGGATCGCCATTTTAGGAGACCCCCAG
Seq A exon
GTTTTGCTCCTGGATGAACCAACTGCTGGGTTGGATCCACTCTCGAGGCATCGCATATGGAACCTACTGAAAGAGAGGAGAGCAGGCAGAGTAATTGTCTTCAGTACTCAGTTCATGGATGAGGCTGATATCCTGGCCG
Seq C2 exon
ACAGGAAGGTGTTTATATCCAATGGGAGACTGAAGTGTGCGGGCTCTTCTCTGTTCCTGAAGAAGAAATGGGGCATTGGCTATCATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
PF0000522=ABC_tran=PD(5.4=17.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACAAGTTCTACAGGACTTAGA
R:
TTAGATGATAGCCAATGCCCCA
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: