HsaALTA1036560-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000154258 | ABCA9
Description
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr17:69026377-69027114:-
Coord C1 exon
chr17:69026976-69027114
Coord A exon
chr17:69026464-69026467
Coord C2 exon
chr17:69026377-69026463
Length
4 bp
Sequences
Splice sites
5' ss Seq
CGGGTAATT
5' ss Score
6.79
3' ss Seq
TTTTGATTATTTCTAACTAGACA
3' ss Score
5.82
Exon sequences
Seq C1 exon
GTTTTGCTATTGGATGAACCGACTGCTGGATTGGATCCTCTTTCAAGGCACCGAATATGGAATCTCCTGAAAGAGGGGAAATCAGACAGAGTAATTCTCTTCAGCACCCAGTTTATAGATGAGGCTGACATTCTGGCGG
Seq A exon
ACAG
Seq C2 exon
GAAGGTGTTCATATCCAATGGGAAGCTGAAGTGTGCAGGCTCTTCTCTGTTCCTTAAGAAGAAATGGGGCATAGGCTACCATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258-24-21,24-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGCTGACATTCTGGCG
R:
TGGTAGCCTATGCCCCATTTC
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains