MmuALTA1033170-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110144199-110144881:-
Coord C1 exon
chr11:110144743-110144881
Coord A exon
chr11:110144286-110144289
Coord C2 exon
chr11:110144199-110144285
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCGGTAACT
5' ss Score
6.39
3' ss Seq
TTTTGGTTCTTCTCAACTAGACA
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTTTTGCTCCTGGATGAACCAACTGCTGGGTTGGATCCACTCTCGAGGCATCGCATATGGAACCTACTGAAAGAGAGGAGAGCAGGCAGAGTAATTGTCTTCAGTACTCAGTTCATGGATGAGGCTGATATCCTGGCCG
Seq A exon
ACAG
Seq C2 exon
GAAGGTGTTTATATCCAATGGGAGACTGAAGTGTGCGGGCTCTTCTCTGTTCCTGAAGAAGAAATGGGGCATTGGCTATCATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-19-17,19-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(5.4=17.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGGAGAGCAGGCAGAG
R:
CGCACACTTCAGTCTCCCATT
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types