HsaALTA1036563-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000154258 | ABCA9
Description
ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr17:69044497-69045336:-
Coord C1 exon
chr17:69045172-69045336
Coord A exon
NA
Coord C2 exon
chr17:69044497-69044600
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GATGTGTTCTTCTTCTAAAGCTC
3' ss Score
7.81
Exon sequences
Seq C1 exon
GAAGAACAATCATGGGGTGGCCTGATGAAAAAAGCATGGATGAATTGGATTTGAACTATTCAATAGACGCAGTGAGAGTCATCTTTACTGATACCTTCTCCTACCATTTGAAGTTTTCTTGGGGACATAGAATCCCCATGATGAAAGAGCACAGAGACCATTCAG
Seq A exon
NA
Seq C2 exon
CTCACTGTCAAGCAGTGAATGAAAAAATGAAGTGTGAAGGTTCAGAGTTCTGGGAGAAAGGCTTTGTAGCTTTTCAAGCTGCCATTAATGCTGCTATCATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154258-8-7,8-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.0=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCATGATGAAAGAGCACA
R:
TGATAGCAGCATTAATGGCAGCT
Band lengths:
132-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains