RnoINT0010501 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98417001-98417732:-
Coord C1 exon
chr10:98417638-98417732
Coord A exon
chr10:98417121-98417637
Coord C2 exon
chr10:98417001-98417120
Length
517 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TCTCCTCAACCTAACTTTAGGCA
3' ss Score
7.81
Exon sequences
Seq C1 exon
CTTTGTTTTGTGCTGAGCATCCTGGGGAACCCTTCTGTGGTGCTGCTGGATGAGCCGTCAACTGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq A exon
GTGAGATTTCAGGAGCCATACTTGTGGGATTTACGGATCTTGTAAAAACTGTCATTCATCGTAGTTTACTTCAAAACATAAGAACAGCCATTCATTACCAGGAAATGCATCGACAGTAGAAGAAGCATACAATTTTGTATTCTGACCAACACTTAGAATACTAAACAAAAGACATACACCTGCCATCTATCACCCATTGTAAGACTTTTGTTCTCATAGACAGGCTGGACCTATGCTTCCCTACACATATGTAGCAGATGTGCAGTTTAGTCTTCATGTGGGTCCCGAACAACTGAAGCAGGGCTATCCCAAAAGCTGCTGCCTGTCCTTCTAGCTGGGCTGCCATGTTTGGCCTCAGTAAGAGAGAAAGCACCTAGCCCAGGAGTCTTAAAGTGCCAGGGTAGGGGACAGCCAGGAGGGCTCCTAACTGCTCAGAGGAGAGTGAGGAGAAGGGAGGGGGAAGGTTTGTGGGAGGGGGATTCTCTTTAGTTAACTGTTCTCCTCAACCTAACTTTAG
Seq C2 exon
GCAGGCGATCCGGGCCACTTTTACAAACACAGAGAGGGGCGCCCTCCTGACCACCCACTACATGGCAGAGGCTGAGGCTGTGTGTGACCGAGTGGCCATCATGGTGTCTGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(14.2=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTTTGTGCTGAGCATCCTG
R:
CTCAGCCTCCCAGACACCAT
Band lengths:
214-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]