BtaEX0001724 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62109128-62111167:+
Coord C1 exon
chr19:62109128-62109354
Coord A exon
chr19:62109900-62110109
Coord C2 exon
chr19:62111026-62111167
Length
210 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTTACAAAACGAGGGA
3' ss Score
-11.97
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
ATCACAACGAATCACTCGGTGATGGAAAACCTGATGTCAGTGACTGGTATAAATATGAAGATACTACCTTTTGTTGCCCAAGCAGGAGTTTTGACTGATTTTTTCGTTTTCTTCTGTGTTATTTCTTTTTCTGCCTTCATATACTACGTATCAGTCAGTGTTGCACAAGAAAGACAGTTCATGAAGCCACTGATGACAATGATGGGACTTCGAGAGTCGGCCTTCTG
Seq A exon
GGATGATTGGAGGCAAAAGGAGAAGAGGGCAGCAGAGGATGAGATGGTCGGATGGCATCGCCGGCTCAGCGGATGTGAATCTGAGCAAACTCCCGGAGATGGTGAAGCAGAGCGAAGCCTGGTGCGCTGCCGTCCAGGGGGTCACAGAGAGTCCGTCGTAACTTAGCCGCTGAACGGCAGCCACAGAAACCAGGGATGGCTTTCACCCAG
Seq C2 exon
GCTGTCCTGGGGTTTGATGTACACTGGCTTCATCTCTATCACAGCCACTCTGATGGCTATTATAGTGACATATGCCCCAGTCGTCATCCTGACTGGCTTCACGGTGGTCTTCACCCTCTTTCTCCTCTACGGCCTGTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.255 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.1=100)
A:
PF126982=ABC2_membrane_3=PD(0.1=0.0)
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Inclusion Isoform:
ENSBTAT00000009067fB272
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGCAGGAGTTTTGACT
R:
AAGACAGGCCGTAGAGGAGAA
Band lengths:
292-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development