BtaINT0011239 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62139996-62140833:+
Coord C1 exon
chr19:62139996-62140064
Coord A exon
chr19:62140065-62140741
Coord C2 exon
chr19:62140742-62140833
Length
677 bp
Sequences
Splice sites
5' ss Seq
ATCGTAAGA
5' ss Score
6.29
3' ss Seq
GATTGTCTTTCTCTCCCCAGCCT
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATTTCTCCCGACTCTGTGGATTACTTGGGGGCTTCAGAACAGCAGGTTGCATATCTGACATTGCTAATC
Seq A exon
GTAAGAAGATGCTTTCATTTAAATGTTCTTGCCTGAGGGGACAGCTTTGTATGCTCTGTGTTAAATGAACAGTTTTAATTCCTGACTTCCGGCATCTGGCCACTAGTTAATACTCATCGTCTGACACTGAGTGGGAAGCCCGAACTCTCAGTGCTGTGGGTAGTGCTAGTATCAACTCATTATTATTTCTTTTCTTACAATAATTTTATTTATTTACTTAAAAATAAACAGAGAAGCCTGCATGGGCTCTCTCTTGTTGCAGAGCTGGGGCCGCGCTCTAGCTGTGCTGTGTGGGCTCCTCACTGCCCCGGCTTCTCTCGTGGTGGACCACGGGGCTCCAGAACTGAGTGAGCTGTGCTTCCCGGGCTCAGCTTCCCTGTGGCATGTGGGATCTTCCCAAATCAGGGATCGAACCCATGTCCCCTGCGCTGGCCGGCAGAGTCTTCCCCACTGAGTCACCAGGGAAGCCCAGCTTACTATTTCTGTCATGATTTCTCTTAAGTACAGTAACACAGACTAGGAGAGCTTCATAAAATATTAATGATATTATCTTTCAATCTTGTGAAAATGTTACCAAATCCTTAAAAACCTTGTACATGATCAAGCTCCTTAAATCAGTTCCAATATGGGAGTTGCTCTTGTACTGATGCTCATGGTGATTGTCTTTCTCTCCCCAG
Seq C2 exon
CCTTACCTTCATTTCTTCATTTTCCTCTTTATCTTACGATGTCTGGAAATGAAATTTAGGAAGAAACCAATGAGAAAGGATCCTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(3.8=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development