GgaINT0127856 @ galGal4
Intron Retention
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8236856-8237660:-
Coord C1 exon
chr18:8237586-8237660
Coord A exon
chr18:8236948-8237585
Coord C2 exon
chr18:8236856-8236947
Length
638 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
GCTGGACCTGTGTGTTTCAGCCC
3' ss Score
5.48
Exon sequences
Seq C1 exon
GTCTCATGGACAGGCAAACAGAAGAGAGGGGAATACTATGACCCATGGGATAGGCTCCTGGTAGCAGTTATAGCT
Seq A exon
GTAAGTATGATTGTTTGCCATACTTCCCATAGAGAATTGCAGACTCCCACTGAGACACCCCTTCTTTTTGGGCTTTTGTACTAATACAACCTAGATCTAATGCTGAGCATCACTGGAGCCTGCTGCTCTGTGACCTGTTGCAGCAGGAGCGGTATCAGTAAAACGCGCTATGCCTACCAGTTCAACATATCCTGCTTCAGTAGTGTTATTAGCAATGCTGTTATTAATCCTAATTATTGTGGGAGTCCATACTAATGGAGCTCCAGAGCAGGGGAGAAAATAAGCAGTTCCTCCTAGAAACCAGGCAATTGCCATGAAATCAAAGCAGCCTTTTCCTATCCAGGGAAGCAGGGATGTAATGATGTGGACATGGTGGTAATGGGTCAACAATTGGACTTGTTCAACTCGTTGACTTAGTCATTGGTTGGACTTGGTGATAACAGAGGTCTTTTCCAACTTTAATGGTTCCATGGTTCTATTTCATCATCTCAGAACCATCAGCATTTCTGTGGTGGTGAAGAGTTGTCTTTCATCGCACTGCTGGGGGTCACCTGTAGGGTCACCGAGAGGGTCACCTGCGGGATCTCCACCCTTGAAGGATTATCAGTGCTCTGATGGGCTGGACCTGTGTGTTTCAG
Seq C2 exon
CCCTATTTACAGTGCATCGTGTGGCTCTTCCTGCTGCGGTGCTTCGAGTTGAAGAGCGGAGGAAGAACCATCAGAGAGGACCCATTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333:ENSGALT00000006907:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.5=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(3.0=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]