RnoINT0010294 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98592903-98595014:-
Coord C1 exon
chr10:98594940-98595014
Coord A exon
chr10:98592995-98594939
Coord C2 exon
chr10:98592903-98592994
Length
1945 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTTCCTACTCTTTCCCTAGCCC
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGTTCTTGGAAGAATATACCAAAAACTGAGAATGCCTACAATCCCTGGGACAGACTTTTAGTTGCTGTAATCATG
Seq A exon
GTAAGAAATAAAAAACCTATTTTCCTGTGTTCATGTGTCCTCATAAGAGTATTAGTGGGGCTGGAGGGATGGTTCAGTGGTTAAGAACAGCGGCTGATTTTCCAGAGGACCCAGGGCCAATTGCCAGCAATTACTTAGCGCCTTACAACTTAACTCCTGCTGCAGGGGATTCTACGATCTCCTCTGTCCTTTACAGACACCAAGTGTTCATCTGGGATACAGAAATTAACAAAGGAAACAAACTAAAAATCCGCATACACATAAAGTAAAATTAAAAAACTAAAAATAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCTCAAGGCCCTGGGTTTGATCCCCAGCTCTGAAAAAAAGAACCAAAAAAAAAAAAAAAAAACAAAACTAAAAATAAGTGCAACTGTTACAGGTTGAGGACATAACTCAGTTATTAAGAAAGCTTGAATGCTTGTCCAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTCATTGCTCTTCCTGAGTTCAATCTCCAGCAACCACACGGTGGCTCACAACCATCTGTTACAGGATGTGTCTGCAGACAGTGACAGTGTACTCAGGTACAGTCAATGCGTCTTTGAAAAAGGACGCTGGTCCAGTATGAGGAGCCATTGATTTAATCCTGAGTTCAGTCATGGCCAGGGTAGCCTGTGGTCCAGCACTAAGTAGGCGGAGGCAGGCCGCTCAGAAGCATGAGCTCGTCCTCAGGTTCCATAGCACAGGATAAATAGCCCTGTTGGGGCACCGGGGGAGGGGAAGCCCTTGGTCCAGCCAAGGTTGGACCCCCAGTGCAGGGGAATATGGGGGGGCAGTAAGGGGGATGAGTGGGGGGGAGGGGAAGGAATGGGGGCTTATGGACAGGAAACCAGGAAGGGGAATAACCTTTGAAATGTAAGTAAAGAAACATATCTAATAAAAAATTAAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAAAAAAAAAAAGAACCAAAAAAATTTAAAAAAATAAATAATTTTGAACACTAACTTACACATATACCTACTAATTTTATATGCCCTTGAAATATTTTGGTGCTTTCCAAATATTAGAAGCTATTTATCACATCTGTTACCATATATTTATACATTTTAGTATATTTTATGTAAATGATTCAATAATTTTTTAAAAAATATTTGTAATTGAAATAGAATTATCACTCGTTCACTCACTCACTCAAAAAAAAAAAAAAAAAGAATGGCTTGGTTGTCAGTGTTGTGATTATCCTGTTAGGTATGGCACAAGCCCATAAGTTAAGTGTGTTATGCTAGTGAATCTGCATTTTTGTAGTAATACCTTTATTTTCCAACTATCTCCACTACCATGCTACTAATTCTGTTTTAATAAAACTGGCTTCCTCCAAGGAAGAGCTTAGCCTTTTATTGTTTGTGAGACAGGGTCTTGAGAGCTCAGGCTGGCCTCGGTCTTATGATCCTTCTGCCTGAATTCTTTGGTGTTGAGGTTAAAGCCAGTGACAGATTCCCAGCTAAGTTTTTATCTTGATTATATTTGTAAAACTGACAGTAAATGAATTTATAGGGGCGGAGAATATGGGAAGAATTGATTTATGGAAAATAACGTTACTTTGTTAGTGTTAAAGTATACGGCTGGGGTTGTAGTTGGTGGAATAATAAAAGCTCTGTGTACCTGAAGCCCTGAATTCAACCTCAAGTACCAAGAAACTAAACAAGACACAGTACTTTTAAATGTCTTTATTATCACAAACGTAAAGCAGTTGGATTTTCCCCTGGTCATGGTAAAGAACTTGAGTTATGTAGTCCTGGTTCTGTGGGAAGAAAAGATGATTTAGTAATGAGCTGTTCCTACTCTTTCCCTAG
Seq C2 exon
CCCTACCTGCAGTGTGTACTGTGGATTTTCCTCTTACAACACTATGAGAAAAAACATGGAGGCAGATCAATAAGAAAGGATCCGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(3.0=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]