BtaALTD0001089-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37959536-37985891:+
Coord C1 exon
chr6:37959536-37959654
Coord A exon
chr6:37959655-37959670
Coord C2 exon
chr6:37985673-37985891
Length
16 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TGTTGCTTTTCCCTCCACAGGAA
3' ss Score
13.17
Exon sequences
Seq C1 exon
AAAGCTTGCGAAGTGAGGCTGAAGTCGGTGCTGCCTGCGCTCGCTCGTCGGCCCTCGACCGCCGGCTCGCCGCCCGCTCTCTCCGACGTGACGGTAACCCGGGGCCAGTGCCTTCCCAG
Seq A exon
GTCAGCCGCTGCGCCG
Seq C2 exon
GAAGGCGGAAATGCTCAAAATGTCTTCCAATAGTTACGAGGTTTCTATCCCAATGTCAAAAAAACTCAACGGCATTCCAGAGACAACCTCTAAGGACCTGCAGACATTAACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAAGTGAAGACTGGCTTTCTACTTTGTCGGAAAACAATTGAGAAAGAAATACTAGCAAATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704-5-3,6-3,7-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACCCGGGGCCAGTG
R:
GAGGTTGTCTCTGGAATGCCG
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development