BtaEX0001882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017704 | ABCG2
Description
Bos taurus ATP-binding cassette, sub-family G (WHITE), member 2 (ABCG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001037478]
Coordinates
chr6:37913110-37985891:+
Coord C1 exon
chr6:37913110-37913444
Coord A exon
chr6:37922623-37922788
Coord C2 exon
chr6:37985673-37985891
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTAATCTGTCACATTGACAGGCC
3' ss Score
5.96
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGATGGAGAAGGAACTGTGGTTAATAACCAGCTAACAGTGGAGAAAAAAGGAAGTCAATTAGATATGAGAACTGGACATTTTCCCAAGACTAGCTTGTTTGGAAAGCCTCAGTCTTTCTGGTAGTTGCAGGGGGCTGATAAGGTTCCTCTCTGGTACTTTCTCTTGCGCCTTGAAAGCTGGCAGGAAGGGAAGCTCCTGGACTGTTAATAGATGCGGCTCTTGCTTGAAGTTTCTATGAGAAAGCCGACAAGAGTCGAAATCTTCTCTGTATCCCCACTGCCTCTCTACAGAGGTTTGGGCTGTTTTCCTTCCAACATCACAGATCATAACTGAG
Seq A exon
GCCACAGGAAAAAAAATACGTGATCATATCAAAAGATGATAAAAAAATTGCTAAAATGCAGTATGGATTCATGATTAAGGACTCTTGTCAAACCAGGAATAGAGGAGGACTCCCTCAACTTGGTAAAGAAATCTACAAAAAGCCTACAGTCAACTTCATACTTCTG
Seq C2 exon
GAAGGCGGAAATGCTCAAAATGTCTTCCAATAGTTACGAGGTTTCTATCCCAATGTCAAAAAAACTCAACGGCATTCCAGAGACAACCTCTAAGGACCTGCAGACATTAACTGAAGGAGCTGTGTTAAGTTTTCATAACATCTGCTATCGAGTAAAAGTGAAGACTGGCTTTCTACTTTGTCGGAAAACAATTGAGAAAGAAATACTAGCAAATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017704_MULTIEX1-3/8=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTGGCAGGAAGGGAAG
R:
GAGGTTGTCTCTGGAATGCCG
Band lengths:
253-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development