BtaALTD0001363-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000013555 | ACVR1B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSQ2]
Coordinates
chr5:28051211-28052474:-
Coord C1 exon
chr5:28052235-28052474
Coord A exon
NA
Coord C2 exon
chr5:28051211-28051459
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TCCTCTCTCACCTGCCCCAGGTC
3' ss Score
8.91
Exon sequences
Seq C1 exon
CTCTGTTGTGTGCGTGCACCAGCTGCCTCCAAGCCAACTACACGTGTGAGACGGATGGGGCCTGCATGGTCTCCATTTTCAACCTGGACGGGATGGAGCACCACGTGCGCACCTGCATCCCCAAAGTGGAGCTGGTCCCGGCCGGGAAGCCCTTCTACTGCCTGAGCTCCGAGGACTTGCGCAACACACACTGCTGCTACACTGACTTCTGCAACAAGATCGACCTGAGGGTGCCCAGCG
Seq A exon
NA
Seq C2 exon
GTCACCTCAAGGAGCCTGAGCACCCCTCCATGTGGGGGCCTGTGGAGCTGGTGGGCATTATTGCCGGCCCAGTGTTCCTCCTCTTTCTCATCATCATCATTGTTTTCCTCGTCATTAACTATCATCAGCGTGTCTATCACAACCGCCAGAGGCTGGACATGGAGGACCCCTCGTGTGAGATGTGTCTCTCCAAGGACAAGACGCTCCAGGACCTGGTCTATGACCTCTCCACGTCAGGGTCTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013555-6-1,7-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACACTGCTGCTACACTG
R:
GAACACTGGGCCGGCAATAAT
Band lengths:
134-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development