MmuALTD1000181-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000000532 | Acvr1b
Description
activin A receptor, type 1B [Source:MGI Symbol;Acc:MGI:1338944]
Coordinates
chr15:101193932-101195057:+
Coord C1 exon
chr15:101193932-101194171
Coord A exon
NA
Coord C2 exon
chr15:101194809-101195057
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ATCCTTGCTCATCTTCCCAGGAC
3' ss Score
8.08
Exon sequences
Seq C1 exon
CTCTGCTGTGTGCGTGCACCAGCTGCCTACAGACCAACTACACCTGTGAGACAGATGGGGCTTGCATGGTCTCCATCTTTAACCTGGATGGCGTGGAGCACCATGTACGTACCTGCATCCCCAAGGTGGAGCTGGTTCCTGCTGGAAAGCCCTTCTACTGCCTGAGTTCAGAGGATCTGCGCAACACACACTGCTGCTATATTGACTTCTGCAACAAGATTGACCTCAGGGTCCCCAGCG
Seq A exon
NA
Seq C2 exon
GACACCTCAAGGAGCCTGCGCACCCCTCCATGTGGGGCCCTGTGGAGCTGGTCGGCATCATCGCCGGCCCCGTCTTCCTCCTCTTCCTTATCATTATCATCGTCTTCCTGGTCATCAACTATCACCAGCGTGTCTACCATAACCGCCAGAGGTTGGACATGGAGGACCCCTCTTGCGAGATGTGTCTCTCCAAAGACAAGACGCTCCAGGATCTCGTCTACGACCTCTCCACGTCAGGGTCTGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000532-12-4,13-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=WD(100=96.3)
A:
NA
C2:
PF085157=TGF_beta_GS=PU(58.6=20.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGCCCTTCTACTGCCT
R:
GTCCAACCTCTGGCGGTTATG
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types