BtaALTD0001453-1/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104489198-104491153:+
Coord C1 exon
chr11:104489198-104489485
Coord A exon
NA
Coord C2 exon
chr11:104490781-104491153
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
AGCACTCGTCTCCCCCGTAGACG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTGGAATCAAAATGGCAAGAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCGCCGCACACCCACCGCCTCCAGCCCATCTACTACAGCTTCTCGGATCCCACCTCTGACAGCGCAGAGAGCCAGGAGCTGGACGGGGCCGGGCTGGCAGGCTTCCTGCAGCACAACGCCTCCCTCTTCGGCCAGGCCTCCTCGGAGCGGCTGGGCCTGGACAACCGCCTGTTTGGCCACCGGGGCCCGGGGATCGAGCTGGGTCTGAGCAGAGGCCAGGAGAGCAACGAG
Seq A exon
NA
Seq C2 exon
ACGGTAACGCCACCCTGACTGCTCTGGTGGGAGACCCGGACGACCGAGAGGCCGACGCCCGTTTCGCCTCCCAGGAGCTGCTGTCGGCCAACGCCATCTCTGATCAGCTGCTGGGCGCAGGCTCCGACTCCAGGGAGCTCTCCCTCAACGAGACCGTCAACAGCATCTTCTCCCAGGGTGCCCCGAGGGGCTCCCCAGCCGAGAGCCTCTACCTGGACTACGAGGAGAGCGAGGGGGCCGGAGCTTACCTGCTCAATGGGTCCTACCTGGAGCTGAGCAGTGACAGGCTGGCCAACACCTCCTCCGAGGCCCCCTTTCCCAACGCCAGCGCCAGCCTCCCCGCCTTGGCCGGGAACCGGACGCAGAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492-11-12,12-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.560
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAGAGGCCAGGAGAG
R:
CAGCAGCTGATCAGAGATGGC
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development