BtaINT0014355 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104489198-104491153:+
Coord C1 exon
chr11:104489198-104489546
Coord A exon
chr11:104489547-104490780
Coord C2 exon
chr11:104490781-104491153
Length
1234 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AGCACTCGTCTCCCCCGTAGACG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTGGAATCAAAATGGCAAGAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCGCCGCACACCCACCGCCTCCAGCCCATCTACTACAGCTTCTCGGATCCCACCTCTGACAGCGCAGAGAGCCAGGAGCTGGACGGGGCCGGGCTGGCAGGCTTCCTGCAGCACAACGCCTCCCTCTTCGGCCAGGCCTCCTCGGAGCGGCTGGGCCTGGACAACCGCCTGTTTGGCCACCGGGGCCCGGGGATCGAGCTGGGTCTGAGCAGAGGCCAGGAGAGCAACGAGGTGTGCGCGCAGGCCAGCGGCAGGGCCTGCGAGGGGCCCCCCAGGGGCAAGGGCTTCCGAG
Seq A exon
GTAACCAGGAGGAGGGGCGGGGCGGGGGGGCTCCTAGGGAGAGGGCCCTCGGGTGAAGGGTCTTCAGAGCCCGCAGCCCGCAGAAGAGGGCGGCGGCGGTGCTGGTCACGCGCGGGCTGCGGGGCAGGGGTGCCCCCCCACACAGCTCCTTCGAGGCGGGTAAGGCTATCTCCACTTGATGGAAGCGGGGACTGAGCCCTAGGGAGGGGTCTTGCCCAAGTCACGCCATCCCCATCTGCTGGGGGCAAATCCCAGAGGGTCAGACCCTATAGCCTGTGCTCTTGACCACTTGGTGGAGACAGACAGACAGACAATGCAGCAAGGTGCGGCGAGAGCTCTGGAAGGGAGTGATGGGCAACTGAGGGGTACAGGGAGGACCTCGAGCCCTTGGTGGGGGGGACCCCTGGACTGAGGGCCCAGGAGTGAGTTAAGGGTGAGCCAGGGGAGGGCTTGGGGCAGGCAGGGGACCTGCATGGGGCGGTCTCCAGGGGAAGTGGCAGTAGGTGCAGGGGGAGACTTGGGGGGTGGACTGGGGTCCCCGAGCCCCAGGCTGGCAGCTGGGCTGTGCTCCTGAGGGCTGTGGGGGGCTGGCCGCGACCATCACTCCTGCCAAGGGCGGAGGGTGGACTGGGCTTGGGAAGAATGTGCTTGCTAACTTGGGGGCATGTTTCCGAGACCCTCGGAGTCCTCAGGTAGAAAACACTTCGGAGACTGTTAGTTCCCCGGGGCTGTGGTGGCAACCGACTGCAAGCTGGGGCCATAAAGCCACAGAAATGCACAGATTCTGTCTTCAGCCGGCTTCTCCTCTGTGTCCGTGTGTCTCCCCGTGTTCTTCTAAGGACAGGGGCATTGCTGTTAGAACCCACTCTAAACCTGTAGTGATCTGCTCTGGAGCTCTGTAGTCTGTAAAGATCTCATTTCTACAGAAGCTCACATTCTGTAGTTGTGGGGCAGGCATGCATTTGGGGAGACCCTATTCAACGCCCCTGCTGAGCTCAAGCAGGTTCCCCAACGAGAGCTTGTCTGGGTTGGTTTGCGGGCCTCCGCTGGACGATCTGGGTCCTCTCACGGGGTGGAAACCTGCCTCTGGGTGCTTCCTGGATCGGGTCTTTGCTGCAGCCCCGCCCCCCCGACCCTGGTCTGCACTACCTGCCCCCCCCATCCCCCCGCAACCAGGGCAACCCTTGCCCCACATGAGGGATCATGGGAGGTTGAGCACTCGTCTCCCCCGTAG
Seq C2 exon
ACGGTAACGCCACCCTGACTGCTCTGGTGGGAGACCCGGACGACCGAGAGGCCGACGCCCGTTTCGCCTCCCAGGAGCTGCTGTCGGCCAACGCCATCTCTGATCAGCTGCTGGGCGCAGGCTCCGACTCCAGGGAGCTCTCCCTCAACGAGACCGTCAACAGCATCTTCTCCCAGGGTGCCCCGAGGGGCTCCCCAGCCGAGAGCCTCTACCTGGACTACGAGGAGAGCGAGGGGGCCGGAGCTTACCTGCTCAATGGGTCCTACCTGGAGCTGAGCAGTGACAGGCTGGCCAACACCTCCTCCGAGGCCCCCTTTCCCAACGCCAGCGCCAGCCTCCCCGCCTTGGCCGGGAACCGGACGCAGAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.560
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGATCCCACCTCTGACAG
R:
CTGATCAGAGATGGCGTTGGC
Band lengths:
358-1592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development