MmuINT0011519 @ mm10
Intron Retention
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27093533-27095772:+
Coord C1 exon
chr2:27093533-27093890
Coord A exon
chr2:27093891-27095402
Coord C2 exon
chr2:27095403-27095772
Length
1512 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AAACACCTGTCTCTCTGCAGACC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCTATCACCTTCGAGTACACCTTGCTGCAGTCACCTCACATGCACCACCTGCCGCCTGTCTATTACAGCTTCTCTGAGGCAGCCTCCCAGAGCACAGAGAGCACCGAGCGGCAGGAGCTGGACAGTGCCAGGCTGCTGGGCTTCATGCAGCACAATGGCTCACTCTACCGCCAGACCTCCTCAGAGAGGCTGGGCCTGAACAGCCAGCTGTTTCAGCCTCCAGCCCCTGAGGTGGAGCTAGGTCCAAGCAGAGGCCAGGAGTCCAACGAGGTGTGCAAGCAAGCCAGCGGTGGGGTCTGTGAGGGACCTCCCAGGGGCAAGGGTTTCCAAG
Seq A exon
GTGAGAAAGAGGAAGAGTGGGTATGGGAAAGGCCTGGGCTCCGCAGGGGCAGAGGCCTCAAGTGAGAAGTGTTGGTCTTCTTTGAAGTCTGCAGAAGAGGCTAAGGAGAATTTCAGTTGCTTGCACATCTCTCTGGGCAGGCAGAGTGTGAAGTCAGAGCTATACAGCCATAGTTCTGCAGATTGGCTATAGGGTGCTCTTGAACACCCAAATTCTCAGCTTCTTAGCTACTCAAATCCCTGTATACTGTGCTGTGTTTGCAGAGAACCTGCATTGATCATCAGAGCTGACCCCAGTACTAGATGCAGTGTGTGTGTACTGTGGGTAGCAATTGACTTTAAGTCAATGCAAGGTGACACAGGATGGAACTGGTATATCAGTGGGTTAGATACTTCTCTCGTTGATTTGACAAAATGCCGACTAAGCAACCCCAGGAAGGAGGGGAGGTTTTATTTTGGCTCCCAATCCCAGGAGATACTTTCCATCATGGCGGCAGGAGCTTAAGGCAGTGGGTCACGTTGCACCTGCAGTCAGGAAGCAGAGGGAGAGAAAGGAAGCTGGTGTTCACTGTCTCAATTGACCTAATCTAGATAACTCCTCATAGACAAGTGTAGAAAGCTTGTCGCCTTGGTGACTCTAGAGCCTGTTAAGTTGACAATCAATATTAACTGTCAAAATCTGCTTAATATAGATATAAGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTCTTTCTTCTCCTCCTCTTCCCCTTCCTTCTCCTCCTTCTGTGAGACTAGAACTTGCTGTGTAAACCAGACTGGTCTCAAATTCATAAGACATCCATCTGTCTCTGCCTTTGCCTTCCCAGTGCTAGGATTAAAGCTGTACGCCACCAGACCCAGACAGCATGAAATTCTTTTTCAAAATATTTGGACCCTTCACCCTCTGATTCTTAGGATGCAGACCCCACATTTGCTGAGGGTGAACCATATATGGCTGTCTGAGTCTGATGGAAGAGATGGGCTTAGAGAGAGGAAGTGATCTGCCAGCTCTTCTACCCTGTGGCTCACTTGGGTAGCACTGGGCCTAATGGATGTTGCTGGGGGTCCTGGGTGTGTTGCCTCACACATACTTCTTTCCTGTGCTGGACTTTTTGAGGTTTACGTGTCTGTGTTCTCTCTTCCTAGCCACGCACCAGTCATTTAAGATTCAACCTAAATCCAGGTTATATTATTTCATGAGCCTATAAAGATCCTCTTTCCAAACCAGATCTGATGCAGAACTTCCAGCCGAGCCTGGGCTTTGGGGACACTGCCAAACCGTCTGCAGTGATCATTGGGTTTCCTATCATTCGATGATATTGGTGTCTTATGGAGAAGAATCTGGGGACTCCTGCTTTTTCCCTGCCCCATGAATTCATCCTGTTCATGTAACTCACCTGTCACACACAGGAATGTGTGGGAGTAGGAGGGACAATCAACACAAGAGCAGCATGGCTGTTGAAACACCTGTCTCTCTGCAG
Seq C2 exon
ACCACAATGCCACTGGGAGAGCTTTCTCCGCGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCACGAGCTTCTCTCAGCCAACACCATCTCCGACCAGCTCTTGGGCACAGGCTCTGAATCAGAAGAGTTCTCACTCAATGAGACCATGAATAGCATCTTTGCCCAGGGTGCTCCCAGAAGCTCCCCAGCTGAGAGCCTCTATGTGGATTATGAGGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAGCTGAGCAGTGACAGGATCAACACCTCCTCTGAGGCCCCATTCCCCAACACCAGTGCCAGCCCCCCCAACTTGGCTGGGAACAGGACTCACAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040:ENSMUST00000091233:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.742
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCCGCCTGTCTATTAC
R:
CACTGATCTCCCGGTCATCCT
Band lengths:
343-1855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types