GgaINT0126467 @ galGal4
Intron Retention
Gene
ENSGALG00000002955 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr17:6978965-6980362:+
Coord C1 exon
chr17:6978965-6979304
Coord A exon
chr17:6979305-6979980
Coord C2 exon
chr17:6979981-6980362
Length
676 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCTGTTGGCTCCAATCTAGATC
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAGGTCAGGAAACCAATGAGGTCTATGAAAGAGCAGAAACAATTGACTGTGAGCCAAAACTGAAGGGCAAACAACCCAAAG
Seq A exon
GTAAGGAGGAGACTTGGGCCTCACTGTTCTGCTCTCAGAGCTCTTGTGGAGAAACGCTCTGTTTCTAACTCTAGTGATCCTGCTGGTTTGTTTGGAAACCTTGGAAAGTTCTTTAAAACATCTCTGCTCATGAATCCTCTTTGCCCTTCAGGTTCTGGTTTCTGGTGGGTGGGGGATGCCATGGGTAAGCTTTCCCACTGATGCCCTGTGGTGCTTTGCCTAATGCTGAAGGGAGGGAGCTCTAGGTGTGCCGGTTGCCCCATCACGACCTTCTTTCTCACTTTGCACTCTTCCACAGTGCCAACAAGCTCCTCTCCATCCCAGTCCCTTGGGCATCCCATTACAAAGCTGCCCTGGGGGCCTTCCCTGCATGGCTTGTGGGCTTGGGACCATTGGGCACCATTCTTACCTCTGCTATTGCTTGGGACCCTGCTGCTGTGTGCTGGGCTGTCCTTGGGTTACACAACTGCAAGATGAGGCCCACAGGGAGCTGTGGACTCTTTCCAAGTGGGGACAACTCCAAAGGTTCCTCCTCCAAGACCCCTACTTCTTCCACTTGCCCCTGACATGGCTGCTCAGGCTCTGGTGTATCCCTGCTGCTCGGGCTGCTTTCACCTCCCAGCCCAAATGCATTTTGTGGTTGTCACTGTTGTTTCCCCTGTTGGCTCCAATCTAG
Seq C2 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGGCCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCCATCAATTCATCTGCAGAGACACCATTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.430 A=NA C2=0.310
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAGTTTGATGGAGACG
R:
GTCAGAGGCCTTGTCCAACAG
Band lengths:
350-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]