GgaINT0126467 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7652059-7653456:+
Coord C1 exon
chr17:7652059-7652398
Coord A exon
chr17:7652399-7653074
Coord C2 exon
chr17:7653075-7653456
Length
676 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCTGTTGGCTCCAATCTAGATC
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAGGTCAGGAAACCAATGAGGTCTATGAAAGAGCAGAAACAATTGACTGTGAGCCAAAACTGAAGGGCAAACAACCCAAAG
Seq A exon
GTAAGGAGGAGACTTGGGCCTCACTGTTCTGCTCTCAGAGCTCTTGTGGAGAAACGCTCTGTTTCTAACTCTAGTGATCCTGCTGGTTTGTTTGGAAACCTTGGAAAGTTCTTTAAAACATCTCTGCTCATGAATCCTCTTTGCCCTTCAGGTTCTGGTTTCTGGTGGGTGGGGGATGCCATGGGTAAGCTTTCCCACTGATGCCCTGTGGTGCTTTGCCTAATGCTGAAGGGGGGGAGCTCTAGGTGTGCCGGTTGCCTCATCACGACCTTCTTTCTCACTTTGCACTCTTCCACAGTGCCAACAAGCTCCTCTCCACCCCAGTCCCTTGGGCATCCCATTACAAAGCTGCCCTGGGGGCCTTCCCTGCATGGCTTGTGGGCTTGGGACCATTGGGCACCATTCATACCTCTGCTATTGCTTGGGACCCTGCTGCTGTGTGCTGGGCTGTCCTTGGGTCACACAACTGCAAGATGAGGCCCACAGGGAGCTGTGGACTCTTTCCAAGTGGGGACGACTCCAAAGGTTCCTCCCCCAGGACCCCTACTTCTTCCACTTGCCCCTGACATGGCTGCTCAGGCTCTGGTGTATCCCTGCTGCTCGGGCTGCTTTCACCTCCCAGCCCAAATGCATTTTGTGGTTGTCACTGTTGTTTCCCCTGTTGGCTCCAATCTAG
Seq C2 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGACCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCTGTCAATTCATCTGCAGAGACACCGTTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAGTTTGATGGAGACG
R:
TCTTGTCCAACAGCTTGTCCG
Band lengths:
342-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]