GgaALTD0001086-1/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr17:7652059-7653456:+
Coord C1 exon
chr17:7652059-7652320
Coord A exon
NA
Coord C2 exon
chr17:7653075-7653456
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CCCTGTTGGCTCCAATCTAGATC
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTCTGGAATCAAAATGGCAAAAATCCATCCATCACGTTTGAATACACTCTCTTGAGGAAGCCACACTCAAATCTCCAGCCCATCTACTACACCTTTTCTGAGTCAGATAGCGAAGAAAGCAGGGAGTTTGATGGAGACGTGCCATTGGGTTTTATCCAACACAACGCAACCTATTTTGGGAAGATCTCCAGGGAAAGGATAGACTTGGAGAACCAGGTGTTTGGAAGACAGGACACGGAGGAAGATTTAAACTTGAGCAAAG
Seq A exon
NA
Seq C2 exon
ATCCAAACGTAACCAGGTCTACTTACCAGACAGACCCTGATGACAGAGACTTCGACCCCACGTTCACCTCCAGGGAATTCCTTTCGGAGAATGCCATCACGGACAAGCTGTTGGACAAGACCTCTGACTCGAAGGAGTTGGTGCTCAACATGACCATGAACAGCATCTTTGCCCAGGGAGACCCAATCAACTCTGTGGGGTCCCACATCGACAGCCTCTACGTTGACTACGAGGACAGTGATGGCATTGTGACCTATACTATCAATGGCACCTACATGGAGCTGAGCAACAGCAAAGCTGTCAATTCATCTGCAGAGACACCGTTTTCAAATGCCACTGTCACCATGACCAGCTCTCAAGGGAACAGAACCCACAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955-9-12,10-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGGAGACGTGCCATTGG
R:
TGTCATCAGGGTCTGTCTGGT
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]